miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24476 5' -51.1 NC_005264.1 + 43612 0.66 0.9933
Target:  5'- aCGaUUGCGCGccAAACCUCgCGUggUCGcGCg -3'
miRNA:   3'- -GCaAGCGUGU--UUUGGAG-GCGa-AGC-CG- -5'
24476 5' -51.1 NC_005264.1 + 90650 0.66 0.9933
Target:  5'- aGggCGCGCgGAGACCgcaUUGCUggCGGCu -3'
miRNA:   3'- gCaaGCGUG-UUUUGGa--GGCGAa-GCCG- -5'
24476 5' -51.1 NC_005264.1 + 74799 0.66 0.9933
Target:  5'- ---cCGUAUu-GACCUguaCGCUUCGGCc -3'
miRNA:   3'- gcaaGCGUGuuUUGGAg--GCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 112565 0.66 0.9933
Target:  5'- aGggCGUugGuGAUCUCCGCggccaUGGCg -3'
miRNA:   3'- gCaaGCGugUuUUGGAGGCGaa---GCCG- -5'
24476 5' -51.1 NC_005264.1 + 76502 0.66 0.993009
Target:  5'- --gUCGgGgGGAauaggcgaccgucuACCgCCGCUUCGGCg -3'
miRNA:   3'- gcaAGCgUgUUU--------------UGGaGGCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 160252 0.66 0.992708
Target:  5'- gGUUCGCGCGGGuuaugcacggccacCCUCaugugaCGCUugUCGGCc -3'
miRNA:   3'- gCAAGCGUGUUUu-------------GGAG------GCGA--AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 118886 0.66 0.992291
Target:  5'- cCGUUCGgGCGguaGGGCCUgaccaCCGCguacUUGGCc -3'
miRNA:   3'- -GCAAGCgUGU---UUUGGA-----GGCGa---AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 103828 0.66 0.992291
Target:  5'- ---aCGCGCcu-GCCUCCGCgaUUCuGGUg -3'
miRNA:   3'- gcaaGCGUGuuuUGGAGGCG--AAG-CCG- -5'
24476 5' -51.1 NC_005264.1 + 49425 0.66 0.992291
Target:  5'- gGUgcCGCACAugGAGCuCUCUGCcgUCGcGCa -3'
miRNA:   3'- gCAa-GCGUGU--UUUG-GAGGCGa-AGC-CG- -5'
24476 5' -51.1 NC_005264.1 + 12620 0.67 0.991164
Target:  5'- uCGUcgcCGCGCAAGACUauaCCGCga-GGCc -3'
miRNA:   3'- -GCAa--GCGUGUUUUGGa--GGCGaagCCG- -5'
24476 5' -51.1 NC_005264.1 + 130439 0.67 0.991164
Target:  5'- gCGUUCcaGCACAAAgucgcggcggacGCCggCCGC--CGGCa -3'
miRNA:   3'- -GCAAG--CGUGUUU------------UGGa-GGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 157390 0.67 0.991164
Target:  5'- gGggCGguUAGGACCUCCuccgGCgagagCGGCg -3'
miRNA:   3'- gCaaGCguGUUUUGGAGG----CGaa---GCCG- -5'
24476 5' -51.1 NC_005264.1 + 154198 0.67 0.991164
Target:  5'- -cUUCGCGCGAAACgUagaCGUggCGGUg -3'
miRNA:   3'- gcAAGCGUGUUUUGgAg--GCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 125260 0.67 0.991164
Target:  5'- --cUCgGCGCGAcuuguucuucGcCCUCCGCggCGGCg -3'
miRNA:   3'- gcaAG-CGUGUU----------UuGGAGGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 11412 0.67 0.991164
Target:  5'- gCGUUCcaGCACAAAgucgcggcggacGCCggCCGC--CGGCa -3'
miRNA:   3'- -GCAAG--CGUGUUU------------UGGa-GGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 38363 0.67 0.991164
Target:  5'- gGggCGguUAGGACCUCCuccgGCgagagCGGCg -3'
miRNA:   3'- gCaaGCguGUUUUGGAGG----CGaa---GCCG- -5'
24476 5' -51.1 NC_005264.1 + 94053 0.67 0.991164
Target:  5'- uGUUUG-ACu--ACUUUCGCUUUGGCg -3'
miRNA:   3'- gCAAGCgUGuuuUGGAGGCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 9711 0.67 0.991164
Target:  5'- -uUUCGCGCcgcuGAGCCauugugcCCGCcgCGGCa -3'
miRNA:   3'- gcAAGCGUGu---UUUGGa------GGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 15831 0.67 0.990429
Target:  5'- cCGUUCGCGCucguAAAguaguucuuccucguCCUCauccuCGuCUUCGGCg -3'
miRNA:   3'- -GCAAGCGUGu---UUU---------------GGAG-----GC-GAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 79710 0.67 0.989912
Target:  5'- ----aGgGCAGAcgcGCCUCCGCggccUUGGCg -3'
miRNA:   3'- gcaagCgUGUUU---UGGAGGCGa---AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.