miRNA display CGI


Results 41 - 60 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24476 5' -51.1 NC_005264.1 + 79710 0.67 0.989912
Target:  5'- ----aGgGCAGAcgcGCCUCCGCggccUUGGCg -3'
miRNA:   3'- gcaagCgUGUUU---UGGAGGCGa---AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 3704 0.67 0.988525
Target:  5'- aGggCGCACAGuACUUgCCGCgggCGGg -3'
miRNA:   3'- gCaaGCGUGUUuUGGA-GGCGaa-GCCg -5'
24476 5' -51.1 NC_005264.1 + 106469 0.67 0.988525
Target:  5'- gGUUCGgA--GGACCUgaaacCCGCUUUGGUg -3'
miRNA:   3'- gCAAGCgUguUUUGGA-----GGCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 42409 0.67 0.988525
Target:  5'- ---aUGCGCGAAGCUcgucccaaaaauUUCGCgUUCGGCg -3'
miRNA:   3'- gcaaGCGUGUUUUGG------------AGGCG-AAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 100193 0.67 0.988525
Target:  5'- aGUUCGguCGcGugCUgCGCUUggaCGGCg -3'
miRNA:   3'- gCAAGCguGUuUugGAgGCGAA---GCCG- -5'
24476 5' -51.1 NC_005264.1 + 47788 0.67 0.988525
Target:  5'- ---cUGCACgAAGACCUCgGCUUUcgccggGGCg -3'
miRNA:   3'- gcaaGCGUG-UUUUGGAGgCGAAG------CCG- -5'
24476 5' -51.1 NC_005264.1 + 119500 0.67 0.988525
Target:  5'- uGgcUGCGCAGGGCgugCUCCGaggCGGCa -3'
miRNA:   3'- gCaaGCGUGUUUUG---GAGGCgaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 19054 0.67 0.988525
Target:  5'- gCGUUCGUgACuAAGCCcgCCGCgg-GGCa -3'
miRNA:   3'- -GCAAGCG-UGuUUUGGa-GGCGaagCCG- -5'
24476 5' -51.1 NC_005264.1 + 80995 0.67 0.986995
Target:  5'- ---aCGCcgACGugGCCUCCGCcUUGGUg -3'
miRNA:   3'- gcaaGCG--UGUuuUGGAGGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 106091 0.67 0.986995
Target:  5'- gCGUgcgUGC-CAAucucGGCCUCCGCggaaaGGCa -3'
miRNA:   3'- -GCAa--GCGuGUU----UUGGAGGCGaag--CCG- -5'
24476 5' -51.1 NC_005264.1 + 122045 0.67 0.986995
Target:  5'- ---cCGCgGCAAGcGgCUCCGCUcUCGGCg -3'
miRNA:   3'- gcaaGCG-UGUUU-UgGAGGCGA-AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 157932 0.67 0.98634
Target:  5'- uCGUUCGCAUcuucgucgcucGCCUCCGCggucccCGGa -3'
miRNA:   3'- -GCAAGCGUGuuu--------UGGAGGCGaa----GCCg -5'
24476 5' -51.1 NC_005264.1 + 41391 0.67 0.986004
Target:  5'- aCGUgucCGCG----GCCUCCGCUUucuuccuaggcaggcCGGCg -3'
miRNA:   3'- -GCAa--GCGUguuuUGGAGGCGAA---------------GCCG- -5'
24476 5' -51.1 NC_005264.1 + 160418 0.67 0.986004
Target:  5'- aCGUgucCGCG----GCCUCCGCUUucuuccuaggcaggcCGGCg -3'
miRNA:   3'- -GCAa--GCGUguuuUGGAGGCGAA---------------GCCG- -5'
24476 5' -51.1 NC_005264.1 + 4209 0.67 0.985311
Target:  5'- gGUUUGcCACGcAAgCUUCGCUaggCGGCg -3'
miRNA:   3'- gCAAGC-GUGUuUUgGAGGCGAa--GCCG- -5'
24476 5' -51.1 NC_005264.1 + 49792 0.67 0.985311
Target:  5'- ----gGCACGGAcuACCUCCGCgucgaGGUg -3'
miRNA:   3'- gcaagCGUGUUU--UGGAGGCGaag--CCG- -5'
24476 5' -51.1 NC_005264.1 + 126574 0.67 0.985311
Target:  5'- ---aCGCACGAGgacgGCCUacCCGCUUCcGCc -3'
miRNA:   3'- gcaaGCGUGUUU----UGGA--GGCGAAGcCG- -5'
24476 5' -51.1 NC_005264.1 + 123236 0.67 0.985311
Target:  5'- gGUUUGcCACGcAAgCUUCGCUaggCGGCg -3'
miRNA:   3'- gCAAGC-GUGUuUUgGAGGCGAa--GCCG- -5'
24476 5' -51.1 NC_005264.1 + 4830 0.67 0.985311
Target:  5'- ---aUGCACGcGGGCCUCUGUUUCuagGGCg -3'
miRNA:   3'- gcaaGCGUGU-UUUGGAGGCGAAG---CCG- -5'
24476 5' -51.1 NC_005264.1 + 65649 0.67 0.985311
Target:  5'- uCGUccUCGUA--GAGCUugUCCGCcUCGGCg -3'
miRNA:   3'- -GCA--AGCGUguUUUGG--AGGCGaAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.