miRNA display CGI


Results 61 - 80 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24476 5' -51.1 NC_005264.1 + 49792 0.67 0.985311
Target:  5'- ----gGCACGGAcuACCUCCGCgucgaGGUg -3'
miRNA:   3'- gcaagCGUGUUU--UGGAGGCGaag--CCG- -5'
24476 5' -51.1 NC_005264.1 + 114368 0.67 0.985134
Target:  5'- ---aCGCGCGGGGCUacugaugUCCGCUUCGcCa -3'
miRNA:   3'- gcaaGCGUGUUUUGG-------AGGCGAAGCcG- -5'
24476 5' -51.1 NC_005264.1 + 96073 0.68 0.983467
Target:  5'- -cUUCGCGCG--GCCuguaUCCGUUgCGGCu -3'
miRNA:   3'- gcAAGCGUGUuuUGG----AGGCGAaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 94873 0.68 0.983467
Target:  5'- uGUUCGCAgcaGAAGCCUuucucgagCCGCa--GGCg -3'
miRNA:   3'- gCAAGCGUg--UUUUGGA--------GGCGaagCCG- -5'
24476 5' -51.1 NC_005264.1 + 87627 0.68 0.983467
Target:  5'- ---cCGCGCAGGGCCgaugcagCCGCguggGGCg -3'
miRNA:   3'- gcaaGCGUGUUUUGGa------GGCGaag-CCG- -5'
24476 5' -51.1 NC_005264.1 + 56411 0.68 0.983467
Target:  5'- cCGcUCGUGCAGGAUCUUCGUgagcccgCGGUg -3'
miRNA:   3'- -GCaAGCGUGUUUUGGAGGCGaa-----GCCG- -5'
24476 5' -51.1 NC_005264.1 + 69005 0.68 0.983467
Target:  5'- uGcgCGCACGGccAACCgaaCCGCcaccUCGGCc -3'
miRNA:   3'- gCaaGCGUGUU--UUGGa--GGCGa---AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 16063 0.68 0.983467
Target:  5'- ---cCGCACcgAGAACCgCCGCg-CGGCg -3'
miRNA:   3'- gcaaGCGUG--UUUUGGaGGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 19659 0.68 0.981453
Target:  5'- --cUCGCAUA--GCUUCCGCgu-GGCa -3'
miRNA:   3'- gcaAGCGUGUuuUGGAGGCGaagCCG- -5'
24476 5' -51.1 NC_005264.1 + 107922 0.68 0.981453
Target:  5'- cCGUUCGCcaGCAGcgccgcGACCUUCGCguggaaGGUg -3'
miRNA:   3'- -GCAAGCG--UGUU------UUGGAGGCGaag---CCG- -5'
24476 5' -51.1 NC_005264.1 + 109876 0.68 0.981453
Target:  5'- aGUUCGCAgCAccGCCgcguagaggcgCUGCaUCGGCg -3'
miRNA:   3'- gCAAGCGU-GUuuUGGa----------GGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 101932 0.68 0.981453
Target:  5'- ---gCGCGCGAAACUggCgGCgUCGGCc -3'
miRNA:   3'- gcaaGCGUGUUUUGGa-GgCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 18408 0.68 0.97926
Target:  5'- cCGUUCcggccgGCGCAGGcgcgcCCUCuCGC-UCGGCg -3'
miRNA:   3'- -GCAAG------CGUGUUUu----GGAG-GCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 161778 0.68 0.97926
Target:  5'- -aUUUGCGgcGAGCCUCCGCa-CGGUg -3'
miRNA:   3'- gcAAGCGUguUUUGGAGGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 35646 0.68 0.97926
Target:  5'- ----gGCACGuuguACCUgCGCUUCGcGCa -3'
miRNA:   3'- gcaagCGUGUuu--UGGAgGCGAAGC-CG- -5'
24476 5' -51.1 NC_005264.1 + 144223 0.68 0.97926
Target:  5'- ---cUGCACAAAcACgUCCGCUgCGGUc -3'
miRNA:   3'- gcaaGCGUGUUU-UGgAGGCGAaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 157644 0.68 0.97926
Target:  5'- uGUUCGCG----GCUUCCGaaguUUCGGCc -3'
miRNA:   3'- gCAAGCGUguuuUGGAGGCg---AAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 38906 0.68 0.978799
Target:  5'- uCGUUCGCAUcuucguccucGCCUCCGCggucccCGGa -3'
miRNA:   3'- -GCAAGCGUGuuu-------UGGAGGCGaa----GCCg -5'
24476 5' -51.1 NC_005264.1 + 75981 0.68 0.97688
Target:  5'- --gUUGC-CAGggucuAGCCUCCGCauaaUCGGCg -3'
miRNA:   3'- gcaAGCGuGUU-----UUGGAGGCGa---AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 118043 0.68 0.97688
Target:  5'- gGUUUGC-CGcgGCgaCCGCggcgUCGGCa -3'
miRNA:   3'- gCAAGCGuGUuuUGgaGGCGa---AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.