miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24476 5' -51.1 NC_005264.1 + 2844 0.69 0.971529
Target:  5'- cCGgUCGCGCucgcGCCgucgcCCGCUgCGGCu -3'
miRNA:   3'- -GCaAGCGUGuuu-UGGa----GGCGAaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 3704 0.67 0.988525
Target:  5'- aGggCGCACAGuACUUgCCGCgggCGGg -3'
miRNA:   3'- gCaaGCGUGUUuUGGA-GGCGaa-GCCg -5'
24476 5' -51.1 NC_005264.1 + 3970 0.71 0.925965
Target:  5'- uGUUCGggUAu-GCUguuagCCGCUUCGGCg -3'
miRNA:   3'- gCAAGCguGUuuUGGa----GGCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 4209 0.67 0.985311
Target:  5'- gGUUUGcCACGcAAgCUUCGCUaggCGGCg -3'
miRNA:   3'- gCAAGC-GUGUuUUgGAGGCGAa--GCCG- -5'
24476 5' -51.1 NC_005264.1 + 4820 0.71 0.908409
Target:  5'- cCGUcgUCGCucuGCAGGugUUCCGCcaggCGGCa -3'
miRNA:   3'- -GCA--AGCG---UGUUUugGAGGCGaa--GCCG- -5'
24476 5' -51.1 NC_005264.1 + 4830 0.67 0.985311
Target:  5'- ---aUGCACGcGGGCCUCUGUUUCuagGGCg -3'
miRNA:   3'- gcaaGCGUGU-UUUGGAGGCGAAG---CCG- -5'
24476 5' -51.1 NC_005264.1 + 5017 0.7 0.940805
Target:  5'- gGUUUGCGCAGAggagGCCacgagguUCCGCgucgUgGGCg -3'
miRNA:   3'- gCAAGCGUGUUU----UGG-------AGGCGa---AgCCG- -5'
24476 5' -51.1 NC_005264.1 + 7547 0.67 0.985311
Target:  5'- ---aCGCACGAGgacgGCCUacCCGCUUCcGCc -3'
miRNA:   3'- gcaaGCGUGUUU----UGGA--GGCGAAGcCG- -5'
24476 5' -51.1 NC_005264.1 + 7739 0.68 0.97688
Target:  5'- cCGUccUCGgaaACGGGcUCUCCGCgUCGGCa -3'
miRNA:   3'- -GCA--AGCg--UGUUUuGGAGGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 8715 0.78 0.586814
Target:  5'- uGcgCGCGCGugGCCgCCGUUUCGGCu -3'
miRNA:   3'- gCaaGCGUGUuuUGGaGGCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 9711 0.67 0.991164
Target:  5'- -uUUCGCGCcgcuGAGCCauugugcCCGCcgCGGCa -3'
miRNA:   3'- gcAAGCGUGu---UUUGGa------GGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 10160 0.65 0.996093
Target:  5'- ---cCGCGucCAGGGCCUCgGCgaguaucuugucgUCGGCa -3'
miRNA:   3'- gcaaGCGU--GUUUUGGAGgCGa------------AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 11412 0.67 0.991164
Target:  5'- gCGUUCcaGCACAAAgucgcggcggacGCCggCCGC--CGGCa -3'
miRNA:   3'- -GCAAG--CGUGUUU------------UGGa-GGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 12620 0.67 0.991164
Target:  5'- uCGUcgcCGCGCAAGACUauaCCGCga-GGCc -3'
miRNA:   3'- -GCAa--GCGUGUUUUGGa--GGCGaagCCG- -5'
24476 5' -51.1 NC_005264.1 + 15831 0.67 0.990429
Target:  5'- cCGUUCGCGCucguAAAguaguucuuccucguCCUCauccuCGuCUUCGGCg -3'
miRNA:   3'- -GCAAGCGUGu---UUU---------------GGAG-----GC-GAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 16063 0.68 0.983467
Target:  5'- ---cCGCACcgAGAACCgCCGCg-CGGCg -3'
miRNA:   3'- gcaaGCGUG--UUUUGGaGGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 18408 0.68 0.97926
Target:  5'- cCGUUCcggccgGCGCAGGcgcgcCCUCuCGC-UCGGCg -3'
miRNA:   3'- -GCAAG------CGUGUUUu----GGAG-GCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 18470 0.68 0.974305
Target:  5'- aCGUcccUCGC-CAAGAgagaCUCCGCccaguagaUUCGGCg -3'
miRNA:   3'- -GCA---AGCGuGUUUUg---GAGGCG--------AAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 18882 0.66 0.995709
Target:  5'- -uUUCGCACucauGggUCUCUccgGCUUgGGCu -3'
miRNA:   3'- gcAAGCGUGu---UuuGGAGG---CGAAgCCG- -5'
24476 5' -51.1 NC_005264.1 + 19054 0.67 0.988525
Target:  5'- gCGUUCGUgACuAAGCCcgCCGCgg-GGCa -3'
miRNA:   3'- -GCAAGCG-UGuUUUGGa-GGCGaagCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.