miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24476 5' -51.1 NC_005264.1 + 19659 0.68 0.981453
Target:  5'- --cUCGCAUA--GCUUCCGCgu-GGCa -3'
miRNA:   3'- gcaAGCGUGUuuUGGAGGCGaagCCG- -5'
24476 5' -51.1 NC_005264.1 + 20616 0.75 0.755562
Target:  5'- aGUUCGUACAGAACCUaggggcacugggcgaCCGUUggCGGUc -3'
miRNA:   3'- gCAAGCGUGUUUUGGA---------------GGCGAa-GCCG- -5'
24476 5' -51.1 NC_005264.1 + 22462 0.69 0.971529
Target:  5'- uGUaCGCGCAuauuGGGCgCUUCGC-UCGGCc -3'
miRNA:   3'- gCAaGCGUGU----UUUG-GAGGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 29796 0.72 0.866757
Target:  5'- aCGUaggCGUugAuauGCUUCCGCcUCGGCg -3'
miRNA:   3'- -GCAa--GCGugUuu-UGGAGGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 31821 0.7 0.945888
Target:  5'- uCGUgacgCGUACucuGCCgugCCGCgcgCGGCa -3'
miRNA:   3'- -GCAa---GCGUGuuuUGGa--GGCGaa-GCCG- -5'
24476 5' -51.1 NC_005264.1 + 33298 0.7 0.945888
Target:  5'- ---cCGCACAGGAC--CCGC-UCGGCg -3'
miRNA:   3'- gcaaGCGUGUUUUGgaGGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 33596 0.74 0.808314
Target:  5'- uGUUCGgACGAGGCUUgCCGCcgcuaaagUUCGGCc -3'
miRNA:   3'- gCAAGCgUGUUUUGGA-GGCG--------AAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 35314 0.75 0.761415
Target:  5'- --cUCGCGCGGAGCCagcUCUuCUUCGGCu -3'
miRNA:   3'- gcaAGCGUGUUUUGG---AGGcGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 35646 0.68 0.97926
Target:  5'- ----gGCACGuuguACCUgCGCUUCGcGCa -3'
miRNA:   3'- gcaagCGUGUuu--UGGAgGCGAAGC-CG- -5'
24476 5' -51.1 NC_005264.1 + 38298 0.66 0.995001
Target:  5'- aCGUUCGUuac--GCCUUCGCggaGGCc -3'
miRNA:   3'- -GCAAGCGuguuuUGGAGGCGaagCCG- -5'
24476 5' -51.1 NC_005264.1 + 38363 0.67 0.991164
Target:  5'- gGggCGguUAGGACCUCCuccgGCgagagCGGCg -3'
miRNA:   3'- gCaaGCguGUUUUGGAGG----CGaa---GCCG- -5'
24476 5' -51.1 NC_005264.1 + 38906 0.68 0.978799
Target:  5'- uCGUUCGCAUcuucguccucGCCUCCGCggucccCGGa -3'
miRNA:   3'- -GCAAGCGUGuuu-------UGGAGGCGaa----GCCg -5'
24476 5' -51.1 NC_005264.1 + 41391 0.67 0.986004
Target:  5'- aCGUgucCGCG----GCCUCCGCUUucuuccuaggcaggcCGGCg -3'
miRNA:   3'- -GCAa--GCGUguuuUGGAGGCGAA---------------GCCG- -5'
24476 5' -51.1 NC_005264.1 + 41919 0.72 0.895473
Target:  5'- aCGacCGCGCAGAAag-CCGC-UCGGCg -3'
miRNA:   3'- -GCaaGCGUGUUUUggaGGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 42409 0.67 0.988525
Target:  5'- ---aUGCGCGAAGCUcgucccaaaaauUUCGCgUUCGGCg -3'
miRNA:   3'- gcaaGCGUGUUUUGG------------AGGCG-AAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 42536 0.66 0.993852
Target:  5'- gCGUggGCGCA--GCUUCCGCgcgucuucgcgcCGGCa -3'
miRNA:   3'- -GCAagCGUGUuuUGGAGGCGaa----------GCCG- -5'
24476 5' -51.1 NC_005264.1 + 43321 0.68 0.974305
Target:  5'- uCGUUCGCG-AGGGCUgCCGCcUCGGa -3'
miRNA:   3'- -GCAAGCGUgUUUUGGaGGCGaAGCCg -5'
24476 5' -51.1 NC_005264.1 + 43612 0.66 0.9933
Target:  5'- aCGaUUGCGCGccAAACCUCgCGUggUCGcGCg -3'
miRNA:   3'- -GCaAGCGUGU--UUUGGAG-GCGa-AGC-CG- -5'
24476 5' -51.1 NC_005264.1 + 44516 0.73 0.834528
Target:  5'- gGUUCGCucGCGAugGACUuuucugCCGCUUCGGUc -3'
miRNA:   3'- gCAAGCG--UGUU--UUGGa-----GGCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 46758 0.72 0.874281
Target:  5'- cCG-UCGCAgGAccaGAUCUUCGCUUgGGCg -3'
miRNA:   3'- -GCaAGCGUgUU---UUGGAGGCGAAgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.