miRNA display CGI


Results 41 - 60 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24476 5' -51.1 NC_005264.1 + 47788 0.67 0.988525
Target:  5'- ---cUGCACgAAGACCUCgGCUUUcgccggGGCg -3'
miRNA:   3'- gcaaGCGUG-UUUUGGAGgCGAAG------CCG- -5'
24476 5' -51.1 NC_005264.1 + 48138 0.71 0.908409
Target:  5'- uCGaggCGCACGAGACCgcgcaaucCUGC-UCGGCg -3'
miRNA:   3'- -GCaa-GCGUGUUUUGGa-------GGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 49314 0.69 0.971529
Target:  5'- --cUCGUACAAgGACCUCCcgcgGCUguucgcgcUCGGCc -3'
miRNA:   3'- gcaAGCGUGUU-UUGGAGG----CGA--------AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 49425 0.66 0.992291
Target:  5'- gGUgcCGCACAugGAGCuCUCUGCcgUCGcGCa -3'
miRNA:   3'- gCAa-GCGUGU--UUUG-GAGGCGa-AGC-CG- -5'
24476 5' -51.1 NC_005264.1 + 49792 0.67 0.985311
Target:  5'- ----gGCACGGAcuACCUCCGCgucgaGGUg -3'
miRNA:   3'- gcaagCGUGUUU--UGGAGGCGaag--CCG- -5'
24476 5' -51.1 NC_005264.1 + 49905 0.7 0.945888
Target:  5'- gCGUUgCGCGCccAAAUC-CCGCUggCGGCg -3'
miRNA:   3'- -GCAA-GCGUGu-UUUGGaGGCGAa-GCCG- -5'
24476 5' -51.1 NC_005264.1 + 50250 0.7 0.945888
Target:  5'- aGUUUGUGC---ACCUgCCGCggCGGCg -3'
miRNA:   3'- gCAAGCGUGuuuUGGA-GGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 51805 0.68 0.974305
Target:  5'- aGUcCGCGC-GAGCCaCCGCUUCGa- -3'
miRNA:   3'- gCAaGCGUGuUUUGGaGGCGAAGCcg -5'
24476 5' -51.1 NC_005264.1 + 51929 0.66 0.995709
Target:  5'- uCGUcCGCGCcGAGCUUggcgagggugCCGCUaacgcgucgugUCGGCg -3'
miRNA:   3'- -GCAaGCGUGuUUUGGA----------GGCGA-----------AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 52080 1.13 0.005285
Target:  5'- uCGUUCGCACAAAACCUCCGCUUCGGCg -3'
miRNA:   3'- -GCAAGCGUGUUUUGGAGGCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 54172 0.66 0.995001
Target:  5'- ---gCGCACAccgccAACCU-CGCcUCGGCg -3'
miRNA:   3'- gcaaGCGUGUu----UUGGAgGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 55360 0.66 0.995001
Target:  5'- -uUUgGC-CAuAGCCgggCCGCgUCGGCg -3'
miRNA:   3'- gcAAgCGuGUuUUGGa--GGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 56411 0.68 0.983467
Target:  5'- cCGcUCGUGCAGGAUCUUCGUgagcccgCGGUg -3'
miRNA:   3'- -GCaAGCGUGUUUUGGAGGCGaa-----GCCG- -5'
24476 5' -51.1 NC_005264.1 + 57432 0.67 0.989912
Target:  5'- ---gCGCGCGAAACggaaaaCUCCGC--CGGCu -3'
miRNA:   3'- gcaaGCGUGUUUUG------GAGGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 57996 0.66 0.995642
Target:  5'- gCGUUCGCAauaGGAGCUUUggggaguUGCUgaaUCGGUa -3'
miRNA:   3'- -GCAAGCGUg--UUUUGGAG-------GCGA---AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 58896 0.7 0.950253
Target:  5'- gCGUUCGCGCAuAgcggaugccGCCUCCuCgaUGGCg -3'
miRNA:   3'- -GCAAGCGUGUuU---------UGGAGGcGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 60675 0.69 0.958262
Target:  5'- --gUCGCGCAgcugggcucccaAGGCCUCCGCagaggUCaGCa -3'
miRNA:   3'- gcaAGCGUGU------------UUUGGAGGCGa----AGcCG- -5'
24476 5' -51.1 NC_005264.1 + 61004 0.71 0.920362
Target:  5'- --cUCGUuCucuGCCUCgGCUUCGGCc -3'
miRNA:   3'- gcaAGCGuGuuuUGGAGgCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 61478 0.66 0.9942
Target:  5'- uCGUUCuaGCGCGccGAcgcGCC-CCGCggucUCGGCu -3'
miRNA:   3'- -GCAAG--CGUGU--UU---UGGaGGCGa---AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 62219 0.71 0.925965
Target:  5'- aGggCGCGCu---CCgcggCCGCUUCGGg -3'
miRNA:   3'- gCaaGCGUGuuuuGGa---GGCGAAGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.