miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24476 5' -51.1 NC_005264.1 + 161778 0.68 0.97926
Target:  5'- -aUUUGCGgcGAGCCUCCGCa-CGGUg -3'
miRNA:   3'- gcAAGCGUguUUUGGAGGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 161364 0.73 0.825971
Target:  5'- aGUggGCACu--ACUUCCGCgaaUCGGCg -3'
miRNA:   3'- gCAagCGUGuuuUGGAGGCGa--AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 160418 0.67 0.986004
Target:  5'- aCGUgucCGCG----GCCUCCGCUUucuuccuaggcaggcCGGCg -3'
miRNA:   3'- -GCAa--GCGUguuuUGGAGGCGAA---------------GCCG- -5'
24476 5' -51.1 NC_005264.1 + 160252 0.66 0.992708
Target:  5'- gGUUCGCGCGGGuuaugcacggccacCCUCaugugaCGCUugUCGGCc -3'
miRNA:   3'- gCAAGCGUGUUUu-------------GGAG------GCGA--AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 159673 0.69 0.958262
Target:  5'- cCGUcgCGCGCGGAGggUCgCCGUUUCGGUu -3'
miRNA:   3'- -GCAa-GCGUGUUUU--GGaGGCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 157932 0.67 0.98634
Target:  5'- uCGUUCGCAUcuucgucgcucGCCUCCGCggucccCGGa -3'
miRNA:   3'- -GCAAGCGUGuuu--------UGGAGGCGaa----GCCg -5'
24476 5' -51.1 NC_005264.1 + 157644 0.68 0.97926
Target:  5'- uGUUCGCG----GCUUCCGaaguUUCGGCc -3'
miRNA:   3'- gCAAGCGUguuuUGGAGGCg---AAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 157390 0.67 0.991164
Target:  5'- gGggCGguUAGGACCUCCuccgGCgagagCGGCg -3'
miRNA:   3'- gCaaGCguGUUUUGGAGG----CGaa---GCCG- -5'
24476 5' -51.1 NC_005264.1 + 157325 0.66 0.995001
Target:  5'- aCGUUCGUuac--GCCUUCGCggaGGCc -3'
miRNA:   3'- -GCAAGCGuguuuUGGAGGCGaagCCG- -5'
24476 5' -51.1 NC_005264.1 + 154341 0.75 0.761415
Target:  5'- --cUCGCGCGGAGCCagcUCUuCUUCGGCu -3'
miRNA:   3'- gcaAGCGUGUUUUGG---AGGcGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 154198 0.67 0.991164
Target:  5'- -cUUCGCGCGAAACgUagaCGUggCGGUg -3'
miRNA:   3'- gcAAGCGUGUUUUGgAg--GCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 152325 0.7 0.945888
Target:  5'- ---cCGCACAGGAC--CCGC-UCGGCg -3'
miRNA:   3'- gcaaGCGUGUUUUGgaGGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 150847 0.7 0.945888
Target:  5'- uCGUgacgCGUACucuGCCgugCCGCgcgCGGCa -3'
miRNA:   3'- -GCAa---GCGUGuuuUGGa--GGCGaa-GCCG- -5'
24476 5' -51.1 NC_005264.1 + 146666 0.7 0.936423
Target:  5'- ---cCGCGaccGACCUCCGCgcagggCGGCa -3'
miRNA:   3'- gcaaGCGUguuUUGGAGGCGaa----GCCG- -5'
24476 5' -51.1 NC_005264.1 + 144223 0.68 0.97926
Target:  5'- ---cUGCACAAAcACgUCCGCUgCGGUc -3'
miRNA:   3'- gcaaGCGUGUUU-UGgAGGCGAaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 142568 0.68 0.97688
Target:  5'- ---gCGCGCAGAcgguccCCUCCGCga-GGCc -3'
miRNA:   3'- gcaaGCGUGUUUu-----GGAGGCGaagCCG- -5'
24476 5' -51.1 NC_005264.1 + 141560 0.66 0.9942
Target:  5'- gCGUccccCGCugGAGauggcguuaccACCUCCGCggCGcGCa -3'
miRNA:   3'- -GCAa---GCGugUUU-----------UGGAGGCGaaGC-CG- -5'
24476 5' -51.1 NC_005264.1 + 130439 0.67 0.991164
Target:  5'- gCGUUCcaGCACAAAgucgcggcggacGCCggCCGC--CGGCa -3'
miRNA:   3'- -GCAAG--CGUGUUU------------UGGa-GGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 127808 0.73 0.846182
Target:  5'- aCG-UCGCGCGAgccAucucccgacagcguuGCCUCCGCggCGGCc -3'
miRNA:   3'- -GCaAGCGUGUU---U---------------UGGAGGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 126743 0.71 0.90653
Target:  5'- cCGUUCGCACcuguccgccaucccGuccucggaaacGGGCuCUCCGCgUCGGCa -3'
miRNA:   3'- -GCAAGCGUG--------------U-----------UUUG-GAGGCGaAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.