miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24476 5' -51.1 NC_005264.1 + 126574 0.67 0.985311
Target:  5'- ---aCGCACGAGgacgGCCUacCCGCUUCcGCc -3'
miRNA:   3'- gcaaGCGUGUUU----UGGA--GGCGAAGcCG- -5'
24476 5' -51.1 NC_005264.1 + 125260 0.67 0.991164
Target:  5'- --cUCgGCGCGAcuuguucuucGcCCUCCGCggCGGCg -3'
miRNA:   3'- gcaAG-CGUGUU----------UuGGAGGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 123846 0.71 0.908409
Target:  5'- cCGUcgUCGCucuGCAGGugUUCCGCcaggCGGCa -3'
miRNA:   3'- -GCA--AGCG---UGUUUugGAGGCGaa--GCCG- -5'
24476 5' -51.1 NC_005264.1 + 123236 0.67 0.985311
Target:  5'- gGUUUGcCACGcAAgCUUCGCUaggCGGCg -3'
miRNA:   3'- gCAAGC-GUGUuUUgGAGGCGAa--GCCG- -5'
24476 5' -51.1 NC_005264.1 + 122045 0.67 0.986995
Target:  5'- ---cCGCgGCAAGcGgCUCCGCUcUCGGCg -3'
miRNA:   3'- gcaaGCG-UGUUU-UgGAGGCGA-AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 121870 0.69 0.971529
Target:  5'- cCGgUCGCGCucgcGCCgucgcCCGCUgCGGCu -3'
miRNA:   3'- -GCaAGCGUGuuu-UGGa----GGCGAaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 119500 0.67 0.988525
Target:  5'- uGgcUGCGCAGGGCgugCUCCGaggCGGCa -3'
miRNA:   3'- gCaaGCGUGUUUUG---GAGGCgaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 118886 0.66 0.992291
Target:  5'- cCGUUCGgGCGguaGGGCCUgaccaCCGCguacUUGGCc -3'
miRNA:   3'- -GCAAGCgUGU---UUUGGA-----GGCGa---AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 118043 0.68 0.97688
Target:  5'- gGUUUGC-CGcgGCgaCCGCggcgUCGGCa -3'
miRNA:   3'- gCAAGCGuGUuuUGgaGGCGa---AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 117673 0.73 0.825971
Target:  5'- cCGUUCGCugccGCGcucuccuGCCUCCGCgucgUGGCg -3'
miRNA:   3'- -GCAAGCG----UGUuu-----UGGAGGCGaa--GCCG- -5'
24476 5' -51.1 NC_005264.1 + 116382 0.72 0.895473
Target:  5'- cCG-UCGCGgGAGACCUCUuCgUCGGCu -3'
miRNA:   3'- -GCaAGCGUgUUUUGGAGGcGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 116238 0.71 0.931319
Target:  5'- cCGUccUCGCcccgcagggACAGAGCCUCCGCa-CGcGCg -3'
miRNA:   3'- -GCA--AGCG---------UGUUUUGGAGGCGaaGC-CG- -5'
24476 5' -51.1 NC_005264.1 + 114368 0.67 0.985134
Target:  5'- ---aCGCGCGGGGCUacugaugUCCGCUUCGcCa -3'
miRNA:   3'- gcaaGCGUGUUUUGG-------AGGCGAAGCcG- -5'
24476 5' -51.1 NC_005264.1 + 112565 0.66 0.9933
Target:  5'- aGggCGUugGuGAUCUCCGCggccaUGGCg -3'
miRNA:   3'- gCaaGCGugUuUUGGAGGCGaa---GCCG- -5'
24476 5' -51.1 NC_005264.1 + 111570 0.66 0.993672
Target:  5'- uCGUgguaacgCGCgACAGAugUUCCGCgauuccugaaccgCGGCg -3'
miRNA:   3'- -GCAa------GCG-UGUUUugGAGGCGaa-----------GCCG- -5'
24476 5' -51.1 NC_005264.1 + 111281 0.73 0.851057
Target:  5'- gGUUCGCACGu--CCaggCCGUgcUCGGCa -3'
miRNA:   3'- gCAAGCGUGUuuuGGa--GGCGa-AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 109876 0.68 0.981453
Target:  5'- aGUUCGCAgCAccGCCgcguagaggcgCUGCaUCGGCg -3'
miRNA:   3'- gCAAGCGU-GUuuUGGa----------GGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 107922 0.68 0.981453
Target:  5'- cCGUUCGCcaGCAGcgccgcGACCUUCGCguggaaGGUg -3'
miRNA:   3'- -GCAAGCG--UGUU------UUGGAGGCGaag---CCG- -5'
24476 5' -51.1 NC_005264.1 + 107593 0.66 0.995709
Target:  5'- aCGUgguacauagCGUACGcguuCUUCCGCUUCaGCg -3'
miRNA:   3'- -GCAa--------GCGUGUuuu-GGAGGCGAAGcCG- -5'
24476 5' -51.1 NC_005264.1 + 106469 0.67 0.988525
Target:  5'- gGUUCGgA--GGACCUgaaacCCGCUUUGGUg -3'
miRNA:   3'- gCAAGCgUguUUUGGA-----GGCGAAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.