miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24476 5' -51.1 NC_005264.1 + 49905 0.7 0.945888
Target:  5'- gCGUUgCGCGCccAAAUC-CCGCUggCGGCg -3'
miRNA:   3'- -GCAA-GCGUGu-UUUGGaGGCGAa-GCCG- -5'
24476 5' -51.1 NC_005264.1 + 123846 0.71 0.908409
Target:  5'- cCGUcgUCGCucuGCAGGugUUCCGCcaggCGGCa -3'
miRNA:   3'- -GCA--AGCG---UGUUUugGAGGCGaa--GCCG- -5'
24476 5' -51.1 NC_005264.1 + 61004 0.71 0.920362
Target:  5'- --cUCGUuCucuGCCUCgGCUUCGGCc -3'
miRNA:   3'- gcaAGCGuGuuuUGGAGgCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 3970 0.71 0.925965
Target:  5'- uGUUCGggUAu-GCUguuagCCGCUUCGGCg -3'
miRNA:   3'- gCAAGCguGUuuUGGa----GGCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 62219 0.71 0.925965
Target:  5'- aGggCGCGCu---CCgcggCCGCUUCGGg -3'
miRNA:   3'- gCaaGCGUGuuuuGGa---GGCGAAGCCg -5'
24476 5' -51.1 NC_005264.1 + 146666 0.7 0.936423
Target:  5'- ---cCGCGaccGACCUCCGCgcagggCGGCa -3'
miRNA:   3'- gcaaGCGUguuUUGGAGGCGaa----GCCG- -5'
24476 5' -51.1 NC_005264.1 + 5017 0.7 0.940805
Target:  5'- gGUUUGCGCAGAggagGCCacgagguUCCGCgucgUgGGCg -3'
miRNA:   3'- gCAAGCGUGUUU----UGG-------AGGCGa---AgCCG- -5'
24476 5' -51.1 NC_005264.1 + 150847 0.7 0.945888
Target:  5'- uCGUgacgCGUACucuGCCgugCCGCgcgCGGCa -3'
miRNA:   3'- -GCAa---GCGUGuuuUGGa--GGCGaa-GCCG- -5'
24476 5' -51.1 NC_005264.1 + 152325 0.7 0.945888
Target:  5'- ---cCGCACAGGAC--CCGC-UCGGCg -3'
miRNA:   3'- gcaaGCGUGUUUUGgaGGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 48138 0.71 0.908409
Target:  5'- uCGaggCGCACGAGACCgcgcaaucCUGC-UCGGCg -3'
miRNA:   3'- -GCaa-GCGUGUUUUGGa-------GGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 126743 0.71 0.90653
Target:  5'- cCGUUCGCACcuguccgccaucccGuccucggaaacGGGCuCUCCGCgUCGGCa -3'
miRNA:   3'- -GCAAGCGUG--------------U-----------UUUG-GAGGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 116382 0.72 0.895473
Target:  5'- cCG-UCGCGgGAGACCUCUuCgUCGGCu -3'
miRNA:   3'- -GCaAGCGUgUUUUGGAGGcGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 154341 0.75 0.761415
Target:  5'- --cUCGCGCGGAGCCagcUCUuCUUCGGCu -3'
miRNA:   3'- gcaAGCGUGUUUUGG---AGGcGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 33596 0.74 0.808314
Target:  5'- uGUUCGgACGAGGCUUgCCGCcgcuaaagUUCGGCc -3'
miRNA:   3'- gCAAGCgUGUUUUGGA-GGCG--------AAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 86752 0.74 0.808314
Target:  5'- uGUUCGCGCccguAGAGCCgucgaCGCUcgCGGCg -3'
miRNA:   3'- gCAAGCGUG----UUUUGGag---GCGAa-GCCG- -5'
24476 5' -51.1 NC_005264.1 + 62667 0.74 0.81723
Target:  5'- aGUUCGC-CAAGA---UCGCUUCGGCg -3'
miRNA:   3'- gCAAGCGuGUUUUggaGGCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 117673 0.73 0.825971
Target:  5'- cCGUUCGCugccGCGcucuccuGCCUCCGCgucgUGGCg -3'
miRNA:   3'- -GCAAGCG----UGUuu-----UGGAGGCGaa--GCCG- -5'
24476 5' -51.1 NC_005264.1 + 44516 0.73 0.834528
Target:  5'- gGUUCGCucGCGAugGACUuuucugCCGCUUCGGUc -3'
miRNA:   3'- gCAAGCG--UGUU--UUGGa-----GGCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 111281 0.73 0.851057
Target:  5'- gGUUCGCACGu--CCaggCCGUgcUCGGCa -3'
miRNA:   3'- gCAAGCGUGUuuuGGa--GGCGa-AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 41919 0.72 0.895473
Target:  5'- aCGacCGCGCAGAAag-CCGC-UCGGCg -3'
miRNA:   3'- -GCaaGCGUGUUUUggaGGCGaAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.