Results 21 - 40 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24476 | 5' | -51.1 | NC_005264.1 | + | 49905 | 0.7 | 0.945888 |
Target: 5'- gCGUUgCGCGCccAAAUC-CCGCUggCGGCg -3' miRNA: 3'- -GCAA-GCGUGu-UUUGGaGGCGAa-GCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 152325 | 0.7 | 0.945888 |
Target: 5'- ---cCGCACAGGAC--CCGC-UCGGCg -3' miRNA: 3'- gcaaGCGUGUUUUGgaGGCGaAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 41919 | 0.72 | 0.895473 |
Target: 5'- aCGacCGCGCAGAAag-CCGC-UCGGCg -3' miRNA: 3'- -GCaaGCGUGUUUUggaGGCGaAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 111281 | 0.73 | 0.851057 |
Target: 5'- gGUUCGCACGu--CCaggCCGUgcUCGGCa -3' miRNA: 3'- gCAAGCGUGUuuuGGa--GGCGa-AGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 44516 | 0.73 | 0.834528 |
Target: 5'- gGUUCGCucGCGAugGACUuuucugCCGCUUCGGUc -3' miRNA: 3'- gCAAGCG--UGUU--UUGGa-----GGCGAAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 117673 | 0.73 | 0.825971 |
Target: 5'- cCGUUCGCugccGCGcucuccuGCCUCCGCgucgUGGCg -3' miRNA: 3'- -GCAAGCG----UGUuu-----UGGAGGCGaa--GCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 62667 | 0.74 | 0.81723 |
Target: 5'- aGUUCGC-CAAGA---UCGCUUCGGCg -3' miRNA: 3'- gCAAGCGuGUUUUggaGGCGAAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 86752 | 0.74 | 0.808314 |
Target: 5'- uGUUCGCGCccguAGAGCCgucgaCGCUcgCGGCg -3' miRNA: 3'- gCAAGCGUG----UUUUGGag---GCGAa-GCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 33596 | 0.74 | 0.808314 |
Target: 5'- uGUUCGgACGAGGCUUgCCGCcgcuaaagUUCGGCc -3' miRNA: 3'- gCAAGCgUGUUUUGGA-GGCG--------AAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 154341 | 0.75 | 0.761415 |
Target: 5'- --cUCGCGCGGAGCCagcUCUuCUUCGGCu -3' miRNA: 3'- gcaAGCGUGUUUUGG---AGGcGAAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 116382 | 0.72 | 0.895473 |
Target: 5'- cCG-UCGCGgGAGACCUCUuCgUCGGCu -3' miRNA: 3'- -GCaAGCGUgUUUUGGAGGcGaAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 126743 | 0.71 | 0.90653 |
Target: 5'- cCGUUCGCACcuguccgccaucccGuccucggaaacGGGCuCUCCGCgUCGGCa -3' miRNA: 3'- -GCAAGCGUG--------------U-----------UUUG-GAGGCGaAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 150847 | 0.7 | 0.945888 |
Target: 5'- uCGUgacgCGUACucuGCCgugCCGCgcgCGGCa -3' miRNA: 3'- -GCAa---GCGUGuuuUGGa--GGCGaa-GCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 5017 | 0.7 | 0.940805 |
Target: 5'- gGUUUGCGCAGAggagGCCacgagguUCCGCgucgUgGGCg -3' miRNA: 3'- gCAAGCGUGUUU----UGG-------AGGCGa---AgCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 146666 | 0.7 | 0.936423 |
Target: 5'- ---cCGCGaccGACCUCCGCgcagggCGGCa -3' miRNA: 3'- gcaaGCGUguuUUGGAGGCGaa----GCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 62219 | 0.71 | 0.925965 |
Target: 5'- aGggCGCGCu---CCgcggCCGCUUCGGg -3' miRNA: 3'- gCaaGCGUGuuuuGGa---GGCGAAGCCg -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 3970 | 0.71 | 0.925965 |
Target: 5'- uGUUCGggUAu-GCUguuagCCGCUUCGGCg -3' miRNA: 3'- gCAAGCguGUuuUGGa----GGCGAAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 61004 | 0.71 | 0.920362 |
Target: 5'- --cUCGUuCucuGCCUCgGCUUCGGCc -3' miRNA: 3'- gcaAGCGuGuuuUGGAGgCGAAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 123846 | 0.71 | 0.908409 |
Target: 5'- cCGUcgUCGCucuGCAGGugUUCCGCcaggCGGCa -3' miRNA: 3'- -GCA--AGCG---UGUUUugGAGGCGaa--GCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 48138 | 0.71 | 0.908409 |
Target: 5'- uCGaggCGCACGAGACCgcgcaaucCUGC-UCGGCg -3' miRNA: 3'- -GCaa-GCGUGUUUUGGa-------GGCGaAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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