miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24476 5' -51.1 NC_005264.1 + 80468 0.66 0.995709
Target:  5'- gGUggUGUGCgAAGugCUCCGCUUCGccGCc -3'
miRNA:   3'- gCAa-GCGUG-UUUugGAGGCGAAGC--CG- -5'
24476 5' -51.1 NC_005264.1 + 15831 0.67 0.990429
Target:  5'- cCGUUCGCGCucguAAAguaguucuuccucguCCUCauccuCGuCUUCGGCg -3'
miRNA:   3'- -GCAAGCGUGu---UUU---------------GGAG-----GC-GAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 19054 0.67 0.988525
Target:  5'- gCGUUCGUgACuAAGCCcgCCGCgg-GGCa -3'
miRNA:   3'- -GCAAGCG-UGuUUUGGa-GGCGaagCCG- -5'
24476 5' -51.1 NC_005264.1 + 52080 1.13 0.005285
Target:  5'- uCGUUCGCACAAAACCUCCGCUUCGGCg -3'
miRNA:   3'- -GCAAGCGUGUUUUGGAGGCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 82557 0.66 0.9942
Target:  5'- gCGgcCGC-CucuuuAAUCUCCGCUgagCGGCc -3'
miRNA:   3'- -GCaaGCGuGuu---UUGGAGGCGAa--GCCG- -5'
24476 5' -51.1 NC_005264.1 + 68452 0.66 0.9942
Target:  5'- gGUcugCGCGCGGAggGCCUCCaCUaauaUUGGCc -3'
miRNA:   3'- gCAa--GCGUGUUU--UGGAGGcGA----AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 90650 0.66 0.9933
Target:  5'- aGggCGCGCgGAGACCgcaUUGCUggCGGCu -3'
miRNA:   3'- gCaaGCGUG-UUUUGGa--GGCGAa-GCCG- -5'
24476 5' -51.1 NC_005264.1 + 112565 0.66 0.9933
Target:  5'- aGggCGUugGuGAUCUCCGCggccaUGGCg -3'
miRNA:   3'- gCaaGCGugUuUUGGAGGCGaa---GCCG- -5'
24476 5' -51.1 NC_005264.1 + 160252 0.66 0.992708
Target:  5'- gGUUCGCGCGGGuuaugcacggccacCCUCaugugaCGCUugUCGGCc -3'
miRNA:   3'- gCAAGCGUGUUUu-------------GGAG------GCGA--AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 38363 0.67 0.991164
Target:  5'- gGggCGguUAGGACCUCCuccgGCgagagCGGCg -3'
miRNA:   3'- gCaaGCguGUUUUGGAGG----CGaa---GCCG- -5'
24476 5' -51.1 NC_005264.1 + 125260 0.67 0.991164
Target:  5'- --cUCgGCGCGAcuuguucuucGcCCUCCGCggCGGCg -3'
miRNA:   3'- gcaAG-CGUGUU----------UuGGAGGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 76502 0.66 0.993009
Target:  5'- --gUCGgGgGGAauaggcgaccgucuACCgCCGCUUCGGCg -3'
miRNA:   3'- gcaAGCgUgUUU--------------UGGaGGCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 57996 0.66 0.995642
Target:  5'- gCGUUCGCAauaGGAGCUUUggggaguUGCUgaaUCGGUa -3'
miRNA:   3'- -GCAAGCGUg--UUUUGGAG-------GCGA---AGCCG- -5'
24476 5' -51.1 NC_005264.1 + 11412 0.67 0.991164
Target:  5'- gCGUUCcaGCACAAAgucgcggcggacGCCggCCGC--CGGCa -3'
miRNA:   3'- -GCAAG--CGUGUUU------------UGGa-GGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 55360 0.66 0.995001
Target:  5'- -uUUgGC-CAuAGCCgggCCGCgUCGGCg -3'
miRNA:   3'- gcAAgCGuGUuUUGGa--GGCGaAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 74799 0.66 0.9933
Target:  5'- ---cCGUAUu-GACCUguaCGCUUCGGCc -3'
miRNA:   3'- gcaaGCGUGuuUUGGAg--GCGAAGCCG- -5'
24476 5' -51.1 NC_005264.1 + 9711 0.67 0.991164
Target:  5'- -uUUCGCGCcgcuGAGCCauugugcCCGCcgCGGCa -3'
miRNA:   3'- gcAAGCGUGu---UUUGGa------GGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 57432 0.67 0.989912
Target:  5'- ---gCGCGCGAAACggaaaaCUCCGC--CGGCu -3'
miRNA:   3'- gcaaGCGUGUUUUG------GAGGCGaaGCCG- -5'
24476 5' -51.1 NC_005264.1 + 38298 0.66 0.995001
Target:  5'- aCGUUCGUuac--GCCUUCGCggaGGCc -3'
miRNA:   3'- -GCAAGCGuguuuUGGAGGCGaagCCG- -5'
24476 5' -51.1 NC_005264.1 + 111570 0.66 0.993672
Target:  5'- uCGUgguaacgCGCgACAGAugUUCCGCgauuccugaaccgCGGCg -3'
miRNA:   3'- -GCAa------GCG-UGUUUugGAGGCGaa-----------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.