Results 21 - 40 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24476 | 5' | -51.1 | NC_005264.1 | + | 122045 | 0.67 | 0.986995 |
Target: 5'- ---cCGCgGCAAGcGgCUCCGCUcUCGGCg -3' miRNA: 3'- gcaaGCG-UGUUU-UgGAGGCGA-AGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 19054 | 0.67 | 0.988525 |
Target: 5'- gCGUUCGUgACuAAGCCcgCCGCgg-GGCa -3' miRNA: 3'- -GCAAGCG-UGuUUUGGa-GGCGaagCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 76502 | 0.66 | 0.993009 |
Target: 5'- --gUCGgGgGGAauaggcgaccgucuACCgCCGCUUCGGCg -3' miRNA: 3'- gcaAGCgUgUUU--------------UGGaGGCGAAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 38298 | 0.66 | 0.995001 |
Target: 5'- aCGUUCGUuac--GCCUUCGCggaGGCc -3' miRNA: 3'- -GCAAGCGuguuuUGGAGGCGaagCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 38906 | 0.68 | 0.978799 |
Target: 5'- uCGUUCGCAUcuucguccucGCCUCCGCggucccCGGa -3' miRNA: 3'- -GCAAGCGUGuuu-------UGGAGGCGaa----GCCg -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 94873 | 0.68 | 0.983467 |
Target: 5'- uGUUCGCAgcaGAAGCCUuucucgagCCGCa--GGCg -3' miRNA: 3'- gCAAGCGUg--UUUUGGA--------GGCGaagCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 15831 | 0.67 | 0.990429 |
Target: 5'- cCGUUCGCGCucguAAAguaguucuuccucguCCUCauccuCGuCUUCGGCg -3' miRNA: 3'- -GCAAGCGUGu---UUU---------------GGAG-----GC-GAAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 55360 | 0.66 | 0.995001 |
Target: 5'- -uUUgGC-CAuAGCCgggCCGCgUCGGCg -3' miRNA: 3'- gcAAgCGuGUuUUGGa--GGCGaAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 7547 | 0.67 | 0.985311 |
Target: 5'- ---aCGCACGAGgacgGCCUacCCGCUUCcGCc -3' miRNA: 3'- gcaaGCGUGUUU----UGGA--GGCGAAGcCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 57996 | 0.66 | 0.995642 |
Target: 5'- gCGUUCGCAauaGGAGCUUUggggaguUGCUgaaUCGGUa -3' miRNA: 3'- -GCAAGCGUg--UUUUGGAG-------GCGA---AGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 57432 | 0.67 | 0.989912 |
Target: 5'- ---gCGCGCGAAACggaaaaCUCCGC--CGGCu -3' miRNA: 3'- gcaaGCGUGUUUUG------GAGGCGaaGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 41391 | 0.67 | 0.986004 |
Target: 5'- aCGUgucCGCG----GCCUCCGCUUucuuccuaggcaggcCGGCg -3' miRNA: 3'- -GCAa--GCGUguuuUGGAGGCGAA---------------GCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 11412 | 0.67 | 0.991164 |
Target: 5'- gCGUUCcaGCACAAAgucgcggcggacGCCggCCGC--CGGCa -3' miRNA: 3'- -GCAAG--CGUGUUU------------UGGa-GGCGaaGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 160252 | 0.66 | 0.992708 |
Target: 5'- gGUUCGCGCGGGuuaugcacggccacCCUCaugugaCGCUugUCGGCc -3' miRNA: 3'- gCAAGCGUGUUUu-------------GGAG------GCGA--AGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 90650 | 0.66 | 0.9933 |
Target: 5'- aGggCGCGCgGAGACCgcaUUGCUggCGGCu -3' miRNA: 3'- gCaaGCGUG-UUUUGGa--GGCGAa-GCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 82557 | 0.66 | 0.9942 |
Target: 5'- gCGgcCGC-CucuuuAAUCUCCGCUgagCGGCc -3' miRNA: 3'- -GCaaGCGuGuu---UUGGAGGCGAa--GCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 51805 | 0.68 | 0.974305 |
Target: 5'- aGUcCGCGC-GAGCCaCCGCUUCGa- -3' miRNA: 3'- gCAaGCGUGuUUUGGaGGCGAAGCcg -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 7739 | 0.68 | 0.97688 |
Target: 5'- cCGUccUCGgaaACGGGcUCUCCGCgUCGGCa -3' miRNA: 3'- -GCA--AGCg--UGUUUuGGAGGCGaAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 101932 | 0.68 | 0.981453 |
Target: 5'- ---gCGCGCGAAACUggCgGCgUCGGCc -3' miRNA: 3'- gcaaGCGUGUUUUGGa-GgCGaAGCCG- -5' |
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24476 | 5' | -51.1 | NC_005264.1 | + | 87627 | 0.68 | 0.983467 |
Target: 5'- ---cCGCGCAGGGCCgaugcagCCGCguggGGCg -3' miRNA: 3'- gcaaGCGUGUUUUGGa------GGCGaag-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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