miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24477 3' -54.5 NC_005264.1 + 58059 0.66 0.963406
Target:  5'- aGAGGAGacUCGCGUGgugGGCauuucuggCGUUUc -3'
miRNA:   3'- gCUCCUU--AGCGCGCa--CCGgaa-----GCAAG- -5'
24477 3' -54.5 NC_005264.1 + 31692 0.66 0.952292
Target:  5'- gCGGGGcugcccgccaaaGGUCGCGCGcggGGCgUacUUGUUCg -3'
miRNA:   3'- -GCUCC------------UUAGCGCGCa--CCGgA--AGCAAG- -5'
24477 3' -54.5 NC_005264.1 + 150718 0.66 0.952292
Target:  5'- gCGGGGcugcccgccaaaGGUCGCGCGcggGGCgUacUUGUUCg -3'
miRNA:   3'- -GCUCC------------UUAGCGCGCa--CCGgA--AGCAAG- -5'
24477 3' -54.5 NC_005264.1 + 87583 0.66 0.948133
Target:  5'- aCGAGGAcgaacacgGCGCGUGGUCg-CGUUa -3'
miRNA:   3'- -GCUCCUuag-----CGCGCACCGGaaGCAAg -5'
24477 3' -54.5 NC_005264.1 + 27577 0.66 0.948133
Target:  5'- aCGGGGAauGUCGCuuG-GGCCgccUCGUUUc -3'
miRNA:   3'- -GCUCCU--UAGCGcgCaCCGGa--AGCAAG- -5'
24477 3' -54.5 NC_005264.1 + 10550 0.66 0.94374
Target:  5'- aGGGGcgcgGAUCGCGCGUucGCCgcugcuuccUCGUUCc -3'
miRNA:   3'- gCUCC----UUAGCGCGCAc-CGGa--------AGCAAG- -5'
24477 3' -54.5 NC_005264.1 + 20229 0.66 0.94374
Target:  5'- gCGAGGuagccCG-GCGUGGCCaUCGUc- -3'
miRNA:   3'- -GCUCCuua--GCgCGCACCGGaAGCAag -5'
24477 3' -54.5 NC_005264.1 + 29137 0.66 0.94374
Target:  5'- uGAGGA---GCGCGUGGCCg------ -3'
miRNA:   3'- gCUCCUuagCGCGCACCGGaagcaag -5'
24477 3' -54.5 NC_005264.1 + 129577 0.66 0.94374
Target:  5'- aGGGGcgcgGAUCGCGCGUucGCCgcugcuuccUCGUUCc -3'
miRNA:   3'- gCUCC----UUAGCGCGCAc-CGGa--------AGCAAG- -5'
24477 3' -54.5 NC_005264.1 + 157230 0.67 0.934244
Target:  5'- -aAGGuguUCGCGUG-GGUCUUCGUg- -3'
miRNA:   3'- gcUCCuu-AGCGCGCaCCGGAAGCAag -5'
24477 3' -54.5 NC_005264.1 + 133961 0.67 0.923793
Target:  5'- cCGGGGucuUCGCG-GUGGCgUUCGc-- -3'
miRNA:   3'- -GCUCCuu-AGCGCgCACCGgAAGCaag -5'
24477 3' -54.5 NC_005264.1 + 64360 0.67 0.918208
Target:  5'- uGAGGAGaugcccUCGCGCGUgccGGCCgggUUGa-- -3'
miRNA:   3'- gCUCCUU------AGCGCGCA---CCGGa--AGCaag -5'
24477 3' -54.5 NC_005264.1 + 162189 0.68 0.886737
Target:  5'- gGAGGGGgggGCGCGUGaGCCUcuaUCGcgCu -3'
miRNA:   3'- gCUCCUUag-CGCGCAC-CGGA---AGCaaG- -5'
24477 3' -54.5 NC_005264.1 + 43162 0.68 0.886737
Target:  5'- gGAGGGGgggGCGCGUGaGCCUcuaUCGcgCu -3'
miRNA:   3'- gCUCCUUag-CGCGCAC-CGGA---AGCaaG- -5'
24477 3' -54.5 NC_005264.1 + 131601 0.69 0.865125
Target:  5'- gGAGGGAgcggCGCGCGUGGgCgcgCGc-- -3'
miRNA:   3'- gCUCCUUa---GCGCGCACCgGaa-GCaag -5'
24477 3' -54.5 NC_005264.1 + 108918 0.69 0.841623
Target:  5'- aCGAGGAAcccgaGcCGCGUGGCUUUCa--- -3'
miRNA:   3'- -GCUCCUUag---C-GCGCACCGGAAGcaag -5'
24477 3' -54.5 NC_005264.1 + 82629 0.71 0.789679
Target:  5'- aGGGGAuaUGCGCGUGGCgUUUGc-- -3'
miRNA:   3'- gCUCCUuaGCGCGCACCGgAAGCaag -5'
24477 3' -54.5 NC_005264.1 + 51772 0.75 0.560227
Target:  5'- aGGGGAGcUCGCGCGgcGGCaCUUCGUcCg -3'
miRNA:   3'- gCUCCUU-AGCGCGCa-CCG-GAAGCAaG- -5'
24477 3' -54.5 NC_005264.1 + 50943 1.1 0.003687
Target:  5'- uCGAGGAAUCGCGCGUGGCCUUCGUUCa -3'
miRNA:   3'- -GCUCCUUAGCGCGCACCGGAAGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.