miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24477 5' -50.4 NC_005264.1 + 27645 0.66 0.996869
Target:  5'- gCGAACUCGuuuGGCCacgcGGCGCu-- -3'
miRNA:   3'- gGCUUGAGCuu-CCGGaau-UCGUGcaa -5'
24477 5' -50.4 NC_005264.1 + 82444 0.66 0.996869
Target:  5'- uUCGucGCUUGGggGGGCCUcguUGGGUACGUc -3'
miRNA:   3'- -GGCu-UGAGCU--UCCGGA---AUUCGUGCAa -5'
24477 5' -50.4 NC_005264.1 + 51291 0.66 0.996764
Target:  5'- aCGAGCagGAAGGCacccucguGCACGUc -3'
miRNA:   3'- gGCUUGagCUUCCGgaauu---CGUGCAa -5'
24477 5' -50.4 NC_005264.1 + 117829 0.66 0.996311
Target:  5'- aCGggUUCGAGGGg---AGGCGCGg- -3'
miRNA:   3'- gGCuuGAGCUUCCggaaUUCGUGCaa -5'
24477 5' -50.4 NC_005264.1 + 43927 0.66 0.995674
Target:  5'- cUCGAcgUCGAGGGCC--AAGUACGc- -3'
miRNA:   3'- -GGCUugAGCUUCCGGaaUUCGUGCaa -5'
24477 5' -50.4 NC_005264.1 + 108100 0.66 0.994129
Target:  5'- aUCGAaagcaaGCUCGucauGGCCUcGAGUAUGUa -3'
miRNA:   3'- -GGCU------UGAGCuu--CCGGAaUUCGUGCAa -5'
24477 5' -50.4 NC_005264.1 + 130913 0.66 0.994129
Target:  5'- gCCGAGCcgCGAGGGCCgUGGGaaaAUGc- -3'
miRNA:   3'- -GGCUUGa-GCUUCCGGaAUUCg--UGCaa -5'
24477 5' -50.4 NC_005264.1 + 14496 0.66 0.994129
Target:  5'- -aGAGCUCcccGGCCcgGGGCACGg- -3'
miRNA:   3'- ggCUUGAGcuuCCGGaaUUCGUGCaa -5'
24477 5' -50.4 NC_005264.1 + 11887 0.66 0.994129
Target:  5'- gCCGAGCcgCGAGGGCCgUGGGaaaAUGc- -3'
miRNA:   3'- -GGCUUGa-GCUUCCGGaAUUCg--UGCaa -5'
24477 5' -50.4 NC_005264.1 + 125467 0.66 0.994041
Target:  5'- gCCGcgcccuGCUCGGAGGCUcgcucuuUUucGAGCGCGg- -3'
miRNA:   3'- -GGCu-----UGAGCUUCCGG-------AA--UUCGUGCaa -5'
24477 5' -50.4 NC_005264.1 + 101547 0.67 0.992167
Target:  5'- aCGGcCUUGAAGGCCgUGAugacugcauGCACGUc -3'
miRNA:   3'- gGCUuGAGCUUCCGGaAUU---------CGUGCAa -5'
24477 5' -50.4 NC_005264.1 + 89947 0.67 0.989718
Target:  5'- uCCGcccaUCGgcGGCCgcuGGCGCGUa -3'
miRNA:   3'- -GGCuug-AGCuuCCGGaauUCGUGCAa -5'
24477 5' -50.4 NC_005264.1 + 83121 0.67 0.989718
Target:  5'- aCGGGCgCcAAGGCCgcggAGGCGCGUc -3'
miRNA:   3'- gGCUUGaGcUUCCGGaa--UUCGUGCAa -5'
24477 5' -50.4 NC_005264.1 + 68700 0.67 0.989718
Target:  5'- aUGAACUCGcaguccauuAGGCCaguucUGAGCGCGg- -3'
miRNA:   3'- gGCUUGAGCu--------UCCGGa----AUUCGUGCaa -5'
24477 5' -50.4 NC_005264.1 + 69165 0.67 0.988288
Target:  5'- gUGAGCUCGggGGCa--GAGUuccuCGUUg -3'
miRNA:   3'- gGCUUGAGCuuCCGgaaUUCGu---GCAA- -5'
24477 5' -50.4 NC_005264.1 + 18445 0.68 0.980978
Target:  5'- gCGGGgUCGAAGGaCgUguagGAGCACGUc -3'
miRNA:   3'- gGCUUgAGCUUCC-GgAa---UUCGUGCAa -5'
24477 5' -50.4 NC_005264.1 + 38404 0.68 0.980978
Target:  5'- -aGAuCUCG-AGGCCgcgGAGCACGc- -3'
miRNA:   3'- ggCUuGAGCuUCCGGaa-UUCGUGCaa -5'
24477 5' -50.4 NC_005264.1 + 62970 0.69 0.967601
Target:  5'- uCCGGACUCGcccAGcCCUUGGcGCACGUc -3'
miRNA:   3'- -GGCUUGAGCu--UCcGGAAUU-CGUGCAa -5'
24477 5' -50.4 NC_005264.1 + 75730 0.69 0.96428
Target:  5'- gCGGGCgcCGGAGGCCagucUGGGUGCGUUa -3'
miRNA:   3'- gGCUUGa-GCUUCCGGa---AUUCGUGCAA- -5'
24477 5' -50.4 NC_005264.1 + 76616 0.7 0.952906
Target:  5'- gCGAACUCGGccGCCcacGAGCACGc- -3'
miRNA:   3'- gGCUUGAGCUucCGGaa-UUCGUGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.