Results 21 - 23 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24477 | 5' | -50.4 | NC_005264.1 | + | 117829 | 0.66 | 0.996311 |
Target: 5'- aCGggUUCGAGGGg---AGGCGCGg- -3' miRNA: 3'- gGCuuGAGCUUCCggaaUUCGUGCaa -5' |
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24477 | 5' | -50.4 | NC_005264.1 | + | 125467 | 0.66 | 0.994041 |
Target: 5'- gCCGcgcccuGCUCGGAGGCUcgcucuuUUucGAGCGCGg- -3' miRNA: 3'- -GGCu-----UGAGCUUCCGG-------AA--UUCGUGCaa -5' |
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24477 | 5' | -50.4 | NC_005264.1 | + | 130913 | 0.66 | 0.994129 |
Target: 5'- gCCGAGCcgCGAGGGCCgUGGGaaaAUGc- -3' miRNA: 3'- -GGCUUGa-GCUUCCGGaAUUCg--UGCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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