miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24478 3' -52.9 NC_005264.1 + 143159 0.66 0.982423
Target:  5'- --aGGAGaaacgagccgcgcuuUCAGAUGCCacgcggaaGCUAUGCGAGc -3'
miRNA:   3'- guaCCUC---------------AGUCUGUGG--------UGAUGCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 103583 0.66 0.981605
Target:  5'- --cGGAGaUCGGAUcgGCCACgGCGUGGc -3'
miRNA:   3'- guaCCUC-AGUCUG--UGGUGaUGCGCUc -5'
24478 3' -52.9 NC_005264.1 + 57576 0.66 0.979437
Target:  5'- -uUGGGccuUUGGcgacuCGCCGCUGCGCGAGa -3'
miRNA:   3'- guACCUc--AGUCu----GUGGUGAUGCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 52828 0.66 0.979437
Target:  5'- cCGUGGuaaUCAuGCACaguGCUACGCGGGa -3'
miRNA:   3'- -GUACCuc-AGUcUGUGg--UGAUGCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 46370 0.66 0.979437
Target:  5'- aUAUGGcGcgcaGGACACCGaUACGCGGGu -3'
miRNA:   3'- -GUACCuCag--UCUGUGGUgAUGCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 99194 0.66 0.976839
Target:  5'- aCGUGGGGUCcucgcAGGCcuccgcgGCCGCUucucuCGCGAa -3'
miRNA:   3'- -GUACCUCAG-----UCUG-------UGGUGAu----GCGCUc -5'
24478 3' -52.9 NC_005264.1 + 139852 0.66 0.971796
Target:  5'- aCAUGGGGUCGaACuauacCCACgACGCuGAGa -3'
miRNA:   3'- -GUACCUCAGUcUGu----GGUGaUGCG-CUC- -5'
24478 3' -52.9 NC_005264.1 + 156735 0.67 0.968845
Target:  5'- gAUGGAcGUCAuccgggucuGcCGCCGCUacgACGCGAGc -3'
miRNA:   3'- gUACCU-CAGU---------CuGUGGUGA---UGCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 109941 0.67 0.968845
Target:  5'- aCAUGGGGUCccAUGCCACcACGCa-- -3'
miRNA:   3'- -GUACCUCAGucUGUGGUGaUGCGcuc -5'
24478 3' -52.9 NC_005264.1 + 59957 0.67 0.968845
Target:  5'- uCAUGGuGUCc-GCGCCGCUcagccACGCGGc -3'
miRNA:   3'- -GUACCuCAGucUGUGGUGA-----UGCGCUc -5'
24478 3' -52.9 NC_005264.1 + 37709 0.67 0.968845
Target:  5'- gAUGGAcGUCAuccgggucuGcCGCCGCUacgACGCGAGc -3'
miRNA:   3'- gUACCU-CAGU---------CuGUGGUGA---UGCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 62963 0.67 0.962298
Target:  5'- --cGGGGUCAGACuuccCCGCcacCGCGGc -3'
miRNA:   3'- guaCCUCAGUCUGu---GGUGau-GCGCUc -5'
24478 3' -52.9 NC_005264.1 + 153358 0.67 0.962298
Target:  5'- --gGGAGgcggCAGACAagaCGCgcgaagcguUGCGCGAGg -3'
miRNA:   3'- guaCCUCa---GUCUGUg--GUG---------AUGCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 139505 0.67 0.962298
Target:  5'- --cGGGG-CAGACcCCGCUGgcCGCGAu -3'
miRNA:   3'- guaCCUCaGUCUGuGGUGAU--GCGCUc -5'
24478 3' -52.9 NC_005264.1 + 18148 0.67 0.95485
Target:  5'- cCGUGGucgcaacuGUCGucgucGGCGCCACUGuCGUGGGg -3'
miRNA:   3'- -GUACCu-------CAGU-----CUGUGGUGAU-GCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 73796 0.67 0.95485
Target:  5'- -cUGGcGUCAGAgUACUACUACacagGCGAGu -3'
miRNA:   3'- guACCuCAGUCU-GUGGUGAUG----CGCUC- -5'
24478 3' -52.9 NC_005264.1 + 59356 0.68 0.950776
Target:  5'- --cGGA-UCAGACugCGC-ACGCGAc -3'
miRNA:   3'- guaCCUcAGUCUGugGUGaUGCGCUc -5'
24478 3' -52.9 NC_005264.1 + 45405 0.68 0.94191
Target:  5'- gAUGGAGggcGGCGCC-CUGCGCGc- -3'
miRNA:   3'- gUACCUCaguCUGUGGuGAUGCGCuc -5'
24478 3' -52.9 NC_005264.1 + 19091 0.68 0.932069
Target:  5'- --gGGAGcCAGgacuGCACCGCggcgGCGCGGa -3'
miRNA:   3'- guaCCUCaGUC----UGUGGUGa---UGCGCUc -5'
24478 3' -52.9 NC_005264.1 + 100372 0.68 0.926778
Target:  5'- aCAUGGGGcaaugcugCGGAUGCCGCUGCuGCGc- -3'
miRNA:   3'- -GUACCUCa-------GUCUGUGGUGAUG-CGCuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.