miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24478 3' -52.9 NC_005264.1 + 17292 0.69 0.896639
Target:  5'- aCAUGGuGgccaCGGuuACCGCUaGCGCGAGa -3'
miRNA:   3'- -GUACCuCa---GUCugUGGUGA-UGCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 18148 0.67 0.95485
Target:  5'- cCGUGGucgcaacuGUCGucgucGGCGCCACUGuCGUGGGg -3'
miRNA:   3'- -GUACCu-------CAGU-----CUGUGGUGAU-GCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 19091 0.68 0.932069
Target:  5'- --gGGAGcCAGgacuGCACCGCggcgGCGCGGa -3'
miRNA:   3'- guaCCUCaGUC----UGUGGUGa---UGCGCUc -5'
24478 3' -52.9 NC_005264.1 + 20699 0.7 0.889886
Target:  5'- uCAUuGAGacUCGGACAguCCAuCUGCGCGAGg -3'
miRNA:   3'- -GUAcCUC--AGUCUGU--GGU-GAUGCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 31650 0.69 0.921241
Target:  5'- --aGGAGgaauaUguGACGCgaACUGCGCGAGg -3'
miRNA:   3'- guaCCUC-----AguCUGUGg-UGAUGCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 32063 0.69 0.915457
Target:  5'- -uUGGAuaGUCGGGCagcgugGCCACUaGCGCGAu -3'
miRNA:   3'- guACCU--CAGUCUG------UGGUGA-UGCGCUc -5'
24478 3' -52.9 NC_005264.1 + 37709 0.67 0.968845
Target:  5'- gAUGGAcGUCAuccgggucuGcCGCCGCUacgACGCGAGc -3'
miRNA:   3'- gUACCU-CAGU---------CuGUGGUGA---UGCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 45129 0.71 0.851103
Target:  5'- gCGUGGGGcgaagaaccagaCAGGCGCCACgACGCGGa -3'
miRNA:   3'- -GUACCUCa-----------GUCUGUGGUGaUGCGCUc -5'
24478 3' -52.9 NC_005264.1 + 45405 0.68 0.94191
Target:  5'- gAUGGAGggcGGCGCC-CUGCGCGc- -3'
miRNA:   3'- gUACCUCaguCUGUGGuGAUGCGCuc -5'
24478 3' -52.9 NC_005264.1 + 46370 0.66 0.979437
Target:  5'- aUAUGGcGcgcaGGACACCGaUACGCGGGu -3'
miRNA:   3'- -GUACCuCag--UCUGUGGUgAUGCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 49755 1.1 0.005476
Target:  5'- cCAUGGAGUCAGACACCACUACGCGAGg -3'
miRNA:   3'- -GUACCUCAGUCUGUGGUGAUGCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 52828 0.66 0.979437
Target:  5'- cCGUGGuaaUCAuGCACaguGCUACGCGGGa -3'
miRNA:   3'- -GUACCuc-AGUcUGUGg--UGAUGCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 57576 0.66 0.979437
Target:  5'- -uUGGGccuUUGGcgacuCGCCGCUGCGCGAGa -3'
miRNA:   3'- guACCUc--AGUCu----GUGGUGAUGCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 59356 0.68 0.950776
Target:  5'- --cGGA-UCAGACugCGC-ACGCGAc -3'
miRNA:   3'- guaCCUcAGUCUGugGUGaUGCGCUc -5'
24478 3' -52.9 NC_005264.1 + 59957 0.67 0.968845
Target:  5'- uCAUGGuGUCc-GCGCCGCUcagccACGCGGc -3'
miRNA:   3'- -GUACCuCAGucUGUGGUGA-----UGCGCUc -5'
24478 3' -52.9 NC_005264.1 + 62963 0.67 0.962298
Target:  5'- --cGGGGUCAGACuuccCCGCcacCGCGGc -3'
miRNA:   3'- guaCCUCAGUCUGu---GGUGau-GCGCUc -5'
24478 3' -52.9 NC_005264.1 + 69528 0.71 0.819213
Target:  5'- --cGGGGUCGGAUAUUAUUGCGCa-- -3'
miRNA:   3'- guaCCUCAGUCUGUGGUGAUGCGcuc -5'
24478 3' -52.9 NC_005264.1 + 73796 0.67 0.95485
Target:  5'- -cUGGcGUCAGAgUACUACUACacagGCGAGu -3'
miRNA:   3'- guACCuCAGUCU-GUGGUGAUG----CGCUC- -5'
24478 3' -52.9 NC_005264.1 + 76278 0.69 0.903154
Target:  5'- --cGGcAGUCAGAaauucCACCAUcuggGCGCGGGg -3'
miRNA:   3'- guaCC-UCAGUCU-----GUGGUGa---UGCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 84008 0.7 0.889886
Target:  5'- --cGGAGaguuUCAGAUugACCAUUAcCGCGAGg -3'
miRNA:   3'- guaCCUC----AGUCUG--UGGUGAU-GCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.