miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24478 3' -52.9 NC_005264.1 + 156735 0.67 0.968845
Target:  5'- gAUGGAcGUCAuccgggucuGcCGCCGCUacgACGCGAGc -3'
miRNA:   3'- gUACCU-CAGU---------CuGUGGUGA---UGCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 153358 0.67 0.962298
Target:  5'- --gGGAGgcggCAGACAagaCGCgcgaagcguUGCGCGAGg -3'
miRNA:   3'- guaCCUCa---GUCUGUg--GUG---------AUGCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 143159 0.66 0.982423
Target:  5'- --aGGAGaaacgagccgcgcuuUCAGAUGCCacgcggaaGCUAUGCGAGc -3'
miRNA:   3'- guaCCUC---------------AGUCUGUGG--------UGAUGCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 139852 0.66 0.971796
Target:  5'- aCAUGGGGUCGaACuauacCCACgACGCuGAGa -3'
miRNA:   3'- -GUACCUCAGUcUGu----GGUGaUGCG-CUC- -5'
24478 3' -52.9 NC_005264.1 + 139505 0.67 0.962298
Target:  5'- --cGGGG-CAGACcCCGCUGgcCGCGAu -3'
miRNA:   3'- guaCCUCaGUCUGuGGUGAU--GCGCUc -5'
24478 3' -52.9 NC_005264.1 + 134852 0.74 0.683739
Target:  5'- uCAUGGcgccuucucGGUCAGAUACCACggGCGCGc- -3'
miRNA:   3'- -GUACC---------UCAGUCUGUGGUGa-UGCGCuc -5'
24478 3' -52.9 NC_005264.1 + 128758 0.69 0.915457
Target:  5'- aCGUGGaAGUCcuucGCGCCAgUGCGCGGc -3'
miRNA:   3'- -GUACC-UCAGuc--UGUGGUgAUGCGCUc -5'
24478 3' -52.9 NC_005264.1 + 123748 0.7 0.889886
Target:  5'- ----uGGUCAGACGCCGCUGCccgcCGAGc -3'
miRNA:   3'- guaccUCAGUCUGUGGUGAUGc---GCUC- -5'
24478 3' -52.9 NC_005264.1 + 113458 0.75 0.636055
Target:  5'- --cGGGGUCGGACcgaccccgcggucguGCCACggucGCGCGAGu -3'
miRNA:   3'- guaCCUCAGUCUG---------------UGGUGa---UGCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 111234 0.68 0.926778
Target:  5'- --aGGAGUUAGuCACguCGCUGCGCGu- -3'
miRNA:   3'- guaCCUCAGUCuGUG--GUGAUGCGCuc -5'
24478 3' -52.9 NC_005264.1 + 109941 0.67 0.968845
Target:  5'- aCAUGGGGUCccAUGCCACcACGCa-- -3'
miRNA:   3'- -GUACCUCAGucUGUGGUGaUGCGcuc -5'
24478 3' -52.9 NC_005264.1 + 104706 0.69 0.896639
Target:  5'- --cGGAGcacCAGACG--GCUGCGCGAGg -3'
miRNA:   3'- guaCCUCa--GUCUGUggUGAUGCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 103583 0.66 0.981605
Target:  5'- --cGGAGaUCGGAUcgGCCACgGCGUGGc -3'
miRNA:   3'- guaCCUC-AGUCUG--UGGUGaUGCGCUc -5'
24478 3' -52.9 NC_005264.1 + 100372 0.68 0.926778
Target:  5'- aCAUGGGGcaaugcugCGGAUGCCGCUGCuGCGc- -3'
miRNA:   3'- -GUACCUCa-------GUCUGUGGUGAUG-CGCuc -5'
24478 3' -52.9 NC_005264.1 + 99194 0.66 0.976839
Target:  5'- aCGUGGGGUCcucgcAGGCcuccgcgGCCGCUucucuCGCGAa -3'
miRNA:   3'- -GUACCUCAG-----UCUG-------UGGUGAu----GCGCUc -5'
24478 3' -52.9 NC_005264.1 + 96544 0.69 0.921241
Target:  5'- --aGGAGUgCAGGgACC-CUACGgGGGg -3'
miRNA:   3'- guaCCUCA-GUCUgUGGuGAUGCgCUC- -5'
24478 3' -52.9 NC_005264.1 + 90323 0.7 0.875681
Target:  5'- --cGGAGUCccaguGGACACCGCgcucuugauuaGCGCGAa -3'
miRNA:   3'- guaCCUCAG-----UCUGUGGUGa----------UGCGCUc -5'
24478 3' -52.9 NC_005264.1 + 84008 0.7 0.889886
Target:  5'- --cGGAGaguuUCAGAUugACCAUUAcCGCGAGg -3'
miRNA:   3'- guaCCUC----AGUCUG--UGGUGAU-GCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 76278 0.69 0.903154
Target:  5'- --cGGcAGUCAGAaauucCACCAUcuggGCGCGGGg -3'
miRNA:   3'- guaCC-UCAGUCU-----GUGGUGa---UGCGCUC- -5'
24478 3' -52.9 NC_005264.1 + 73796 0.67 0.95485
Target:  5'- -cUGGcGUCAGAgUACUACUACacagGCGAGu -3'
miRNA:   3'- guACCuCAGUCU-GUGGUGAUG----CGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.