Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24478 | 3' | -52.9 | NC_005264.1 | + | 104706 | 0.69 | 0.896639 |
Target: 5'- --cGGAGcacCAGACG--GCUGCGCGAGg -3' miRNA: 3'- guaCCUCa--GUCUGUggUGAUGCGCUC- -5' |
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24478 | 3' | -52.9 | NC_005264.1 | + | 17292 | 0.69 | 0.896639 |
Target: 5'- aCAUGGuGgccaCGGuuACCGCUaGCGCGAGa -3' miRNA: 3'- -GUACCuCa---GUCugUGGUGA-UGCGCUC- -5' |
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24478 | 3' | -52.9 | NC_005264.1 | + | 84008 | 0.7 | 0.889886 |
Target: 5'- --cGGAGaguuUCAGAUugACCAUUAcCGCGAGg -3' miRNA: 3'- guaCCUC----AGUCUG--UGGUGAU-GCGCUC- -5' |
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24478 | 3' | -52.9 | NC_005264.1 | + | 90323 | 0.7 | 0.875681 |
Target: 5'- --cGGAGUCccaguGGACACCGCgcucuugauuaGCGCGAa -3' miRNA: 3'- guaCCUCAG-----UCUGUGGUGa----------UGCGCUc -5' |
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24478 | 3' | -52.9 | NC_005264.1 | + | 45129 | 0.71 | 0.851103 |
Target: 5'- gCGUGGGGcgaagaaccagaCAGGCGCCACgACGCGGa -3' miRNA: 3'- -GUACCUCa-----------GUCUGUGGUGaUGCGCUc -5' |
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24478 | 3' | -52.9 | NC_005264.1 | + | 69528 | 0.71 | 0.819213 |
Target: 5'- --cGGGGUCGGAUAUUAUUGCGCa-- -3' miRNA: 3'- guaCCUCAGUCUGUGGUGAUGCGcuc -5' |
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24478 | 3' | -52.9 | NC_005264.1 | + | 31650 | 0.69 | 0.921241 |
Target: 5'- --aGGAGgaauaUguGACGCgaACUGCGCGAGg -3' miRNA: 3'- guaCCUC-----AguCUGUGg-UGAUGCGCUC- -5' |
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24478 | 3' | -52.9 | NC_005264.1 | + | 111234 | 0.68 | 0.926778 |
Target: 5'- --aGGAGUUAGuCACguCGCUGCGCGu- -3' miRNA: 3'- guaCCUCAGUCuGUG--GUGAUGCGCuc -5' |
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24478 | 3' | -52.9 | NC_005264.1 | + | 143159 | 0.66 | 0.982423 |
Target: 5'- --aGGAGaaacgagccgcgcuuUCAGAUGCCacgcggaaGCUAUGCGAGc -3' miRNA: 3'- guaCCUC---------------AGUCUGUGG--------UGAUGCGCUC- -5' |
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24478 | 3' | -52.9 | NC_005264.1 | + | 52828 | 0.66 | 0.979437 |
Target: 5'- cCGUGGuaaUCAuGCACaguGCUACGCGGGa -3' miRNA: 3'- -GUACCuc-AGUcUGUGg--UGAUGCGCUC- -5' |
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24478 | 3' | -52.9 | NC_005264.1 | + | 99194 | 0.66 | 0.976839 |
Target: 5'- aCGUGGGGUCcucgcAGGCcuccgcgGCCGCUucucuCGCGAa -3' miRNA: 3'- -GUACCUCAG-----UCUG-------UGGUGAu----GCGCUc -5' |
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24478 | 3' | -52.9 | NC_005264.1 | + | 37709 | 0.67 | 0.968845 |
Target: 5'- gAUGGAcGUCAuccgggucuGcCGCCGCUacgACGCGAGc -3' miRNA: 3'- gUACCU-CAGU---------CuGUGGUGA---UGCGCUC- -5' |
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24478 | 3' | -52.9 | NC_005264.1 | + | 153358 | 0.67 | 0.962298 |
Target: 5'- --gGGAGgcggCAGACAagaCGCgcgaagcguUGCGCGAGg -3' miRNA: 3'- guaCCUCa---GUCUGUg--GUG---------AUGCGCUC- -5' |
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24478 | 3' | -52.9 | NC_005264.1 | + | 59356 | 0.68 | 0.950776 |
Target: 5'- --cGGA-UCAGACugCGC-ACGCGAc -3' miRNA: 3'- guaCCUcAGUCUGugGUGaUGCGCUc -5' |
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24478 | 3' | -52.9 | NC_005264.1 | + | 18148 | 0.67 | 0.95485 |
Target: 5'- cCGUGGucgcaacuGUCGucgucGGCGCCACUGuCGUGGGg -3' miRNA: 3'- -GUACCu-------CAGU-----CUGUGGUGAU-GCGCUC- -5' |
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24478 | 3' | -52.9 | NC_005264.1 | + | 45405 | 0.68 | 0.94191 |
Target: 5'- gAUGGAGggcGGCGCC-CUGCGCGc- -3' miRNA: 3'- gUACCUCaguCUGUGGuGAUGCGCuc -5' |
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24478 | 3' | -52.9 | NC_005264.1 | + | 49755 | 1.1 | 0.005476 |
Target: 5'- cCAUGGAGUCAGACACCACUACGCGAGg -3' miRNA: 3'- -GUACCUCAGUCUGUGGUGAUGCGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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