miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24478 5' -58.3 NC_005264.1 + 66613 0.66 0.849651
Target:  5'- ---cCGCGUugccGGcgcCGUCGCGGCCCGa -3'
miRNA:   3'- cagaGCGCAu---UCua-GCGGCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 112332 0.66 0.844952
Target:  5'- -gCUCGUGUucggcuucGAGGgcagcuuuggggauuUUGCCGCGGUCCu -3'
miRNA:   3'- caGAGCGCA--------UUCU---------------AGCGGCGCCGGGu -5'
24478 5' -58.3 NC_005264.1 + 17759 0.66 0.833729
Target:  5'- -gUUCGCGgcaagGAGAgcuGCC-CGGCCCGg -3'
miRNA:   3'- caGAGCGCa----UUCUag-CGGcGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 63625 0.66 0.825499
Target:  5'- cGUUUCGCGaGAGAagCgGCCGCggaGGCCUg -3'
miRNA:   3'- -CAGAGCGCaUUCUa-G-CGGCG---CCGGGu -5'
24478 5' -58.3 NC_005264.1 + 135960 0.66 0.817101
Target:  5'- uUCUCGCGUAuucuUUGuuGCGGUCgGg -3'
miRNA:   3'- cAGAGCGCAUucu-AGCggCGCCGGgU- -5'
24478 5' -58.3 NC_005264.1 + 121435 0.66 0.817101
Target:  5'- uUCUgGCGUguccGAGAcacaGCgCGCGGCCUAc -3'
miRNA:   3'- cAGAgCGCA----UUCUag--CG-GCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 94503 0.66 0.817101
Target:  5'- -gCUCGCGUuAGugcaGCCGuCGGCCa- -3'
miRNA:   3'- caGAGCGCAuUCuag-CGGC-GCCGGgu -5'
24478 5' -58.3 NC_005264.1 + 140059 0.66 0.817101
Target:  5'- ----gGCGUGAGcaguGUCGCCGCGcCCCu -3'
miRNA:   3'- cagagCGCAUUC----UAGCGGCGCcGGGu -5'
24478 5' -58.3 NC_005264.1 + 14656 0.66 0.817101
Target:  5'- -cCUCGCGgcaacggcaGAGAccaugcUGCCGgGGCCCAu -3'
miRNA:   3'- caGAGCGCa--------UUCUa-----GCGGCgCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 154883 0.66 0.808541
Target:  5'- cUCUaggcaGCGacaAAGA-CGCCGCGGCCg- -3'
miRNA:   3'- cAGAg----CGCa--UUCUaGCGGCGCCGGgu -5'
24478 5' -58.3 NC_005264.1 + 159674 0.66 0.808541
Target:  5'- cGUCgcgCGCGgaGGGUCGCCGUuucGGUugCCGc -3'
miRNA:   3'- -CAGa--GCGCauUCUAGCGGCG---CCG--GGU- -5'
24478 5' -58.3 NC_005264.1 + 157622 0.67 0.799827
Target:  5'- ---cCGCGgaagAAGAgcuucgccUCGCCGCGGCgCGa -3'
miRNA:   3'- cagaGCGCa---UUCU--------AGCGGCGCCGgGU- -5'
24478 5' -58.3 NC_005264.1 + 38595 0.67 0.799827
Target:  5'- ---cCGCGgaagAAGAgcuucgccUCGCCGCGGCgCGa -3'
miRNA:   3'- cagaGCGCa---UUCU--------AGCGGCGCCGgGU- -5'
24478 5' -58.3 NC_005264.1 + 94398 0.67 0.799827
Target:  5'- -cCUCGUcUAuGAUCagGCCGCGGCgCCGg -3'
miRNA:   3'- caGAGCGcAUuCUAG--CGGCGCCG-GGU- -5'
24478 5' -58.3 NC_005264.1 + 145539 0.67 0.799827
Target:  5'- gGUCUCGCGcUAGcGGUaaCCGUGGCCa- -3'
miRNA:   3'- -CAGAGCGC-AUU-CUAgcGGCGCCGGgu -5'
24478 5' -58.3 NC_005264.1 + 90859 0.67 0.798947
Target:  5'- -gCUCGCGUAGGAUCGCgauucugUGcCGGCa-- -3'
miRNA:   3'- caGAGCGCAUUCUAGCG-------GC-GCCGggu -5'
24478 5' -58.3 NC_005264.1 + 20271 0.67 0.790966
Target:  5'- -cCUCGCGgagGGGAccgucugcgCGCuUGCGGCCCc -3'
miRNA:   3'- caGAGCGCa--UUCUa--------GCG-GCGCCGGGu -5'
24478 5' -58.3 NC_005264.1 + 133965 0.67 0.781968
Target:  5'- gGUCuUCGCGgu-GGcguUCGCCgcGCGGUCCAu -3'
miRNA:   3'- -CAG-AGCGCauuCU---AGCGG--CGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 42431 0.67 0.772841
Target:  5'- aUUUCGCGUucGG-CGCUGCGGCaCUc -3'
miRNA:   3'- cAGAGCGCAuuCUaGCGGCGCCG-GGu -5'
24478 5' -58.3 NC_005264.1 + 71714 0.67 0.763593
Target:  5'- uUCUCGCGUGGGGcUGCaGuCGGCCa- -3'
miRNA:   3'- cAGAGCGCAUUCUaGCGgC-GCCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.