miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24478 5' -58.3 NC_005264.1 + 49789 1.08 0.002059
Target:  5'- cGUCUCGCGUAAGAUCGCCGCGGCCCAg -3'
miRNA:   3'- -CAGAGCGCAUUCUAGCGGCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 122888 0.8 0.178526
Target:  5'- -aCUCGCagccGAGGUCGCCGUGGCCCc -3'
miRNA:   3'- caGAGCGca--UUCUAGCGGCGCCGGGu -5'
24478 5' -58.3 NC_005264.1 + 3862 0.8 0.178526
Target:  5'- -aCUCGCagccGAGGUCGCCGUGGCCCc -3'
miRNA:   3'- caGAGCGca--UUCUAGCGGCGCCGGGu -5'
24478 5' -58.3 NC_005264.1 + 157235 0.77 0.274881
Target:  5'- -gUUCGCGUGGGucuUCGUgGCGGCCCu -3'
miRNA:   3'- caGAGCGCAUUCu--AGCGgCGCCGGGu -5'
24478 5' -58.3 NC_005264.1 + 70922 0.75 0.359804
Target:  5'- uUUUUGUGUAuGGUCGCCGCGcccGCCCAu -3'
miRNA:   3'- cAGAGCGCAUuCUAGCGGCGC---CGGGU- -5'
24478 5' -58.3 NC_005264.1 + 53050 0.74 0.40022
Target:  5'- aGUCgCGCGgagggaagaUAAGGUgGCCGCGGaCCCAg -3'
miRNA:   3'- -CAGaGCGC---------AUUCUAgCGGCGCC-GGGU- -5'
24478 5' -58.3 NC_005264.1 + 69750 0.74 0.406951
Target:  5'- uGUCg-GCGagcugagaagccGAGGUCGCCGCGGCCCc -3'
miRNA:   3'- -CAGagCGCa-----------UUCUAGCGGCGCCGGGu -5'
24478 5' -58.3 NC_005264.1 + 142701 0.72 0.517573
Target:  5'- uUUUUGCGcgcGGUaGCCGCGGCCCAg -3'
miRNA:   3'- cAGAGCGCauuCUAgCGGCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 136685 0.71 0.527206
Target:  5'- ---cCGCGaAAGuccUCGCCGCGGCCUg -3'
miRNA:   3'- cagaGCGCaUUCu--AGCGGCGCCGGGu -5'
24478 5' -58.3 NC_005264.1 + 23084 0.71 0.546665
Target:  5'- uGUCUCGCGUuacgcgauacAAGuauUUGCCGCcggaGGCCCc -3'
miRNA:   3'- -CAGAGCGCA----------UUCu--AGCGGCG----CCGGGu -5'
24478 5' -58.3 NC_005264.1 + 57681 0.71 0.556481
Target:  5'- aGUUcCGCGUGAGAgaacUCGaCCGCGGCauaCAg -3'
miRNA:   3'- -CAGaGCGCAUUCU----AGC-GGCGCCGg--GU- -5'
24478 5' -58.3 NC_005264.1 + 124033 0.71 0.576257
Target:  5'- cGUC-CGCGccGGGGUCGCCGCGGaguacgucaCCGg -3'
miRNA:   3'- -CAGaGCGCa-UUCUAGCGGCGCCg--------GGU- -5'
24478 5' -58.3 NC_005264.1 + 5006 0.71 0.576257
Target:  5'- cGUC-CGCGccGGGGUCGCCGCGGaguacgucaCCGg -3'
miRNA:   3'- -CAGaGCGCa-UUCUAGCGGCGCCg--------GGU- -5'
24478 5' -58.3 NC_005264.1 + 14179 0.71 0.576257
Target:  5'- uUCUCGCcucgGUGGcGAUCGCCGUcGCCCc -3'
miRNA:   3'- cAGAGCG----CAUU-CUAGCGGCGcCGGGu -5'
24478 5' -58.3 NC_005264.1 + 33985 0.7 0.586206
Target:  5'- cUCUCGCGaacg--UGCgGCGGCCCAu -3'
miRNA:   3'- cAGAGCGCauucuaGCGgCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 153012 0.7 0.586206
Target:  5'- cUCUCGCGaacg--UGCgGCGGCCCAu -3'
miRNA:   3'- cAGAGCGCauucuaGCGgCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 157313 0.7 0.616218
Target:  5'- cUC-CGCGcGAGA-CGCCGCGGCUg- -3'
miRNA:   3'- cAGaGCGCaUUCUaGCGGCGCCGGgu -5'
24478 5' -58.3 NC_005264.1 + 27977 0.69 0.634286
Target:  5'- ---aCGCGUGAcGAcgaccgccguaGCCGCGGCCCAu -3'
miRNA:   3'- cagaGCGCAUU-CUag---------CGGCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 68423 0.69 0.646332
Target:  5'- -gCUCGCucuGGAcuaccggCGCCGCGGCCUg -3'
miRNA:   3'- caGAGCGcauUCUa------GCGGCGCCGGGu -5'
24478 5' -58.3 NC_005264.1 + 107466 0.69 0.666367
Target:  5'- -aUUUGCGU-AGAcCGCCgacGCGGCCCGg -3'
miRNA:   3'- caGAGCGCAuUCUaGCGG---CGCCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.