Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 125905 | 0.69 | 0.686294 |
Target: 5'- ----aGCGUAAGAa--CCGCGGCCCGc -3' miRNA: 3'- cagagCGCAUUCUagcGGCGCCGGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 87293 | 0.68 | 0.706049 |
Target: 5'- aUC-CGCGUuacGGGAgCGUaCGCGGCCCGa -3' miRNA: 3'- cAGaGCGCA---UUCUaGCG-GCGCCGGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 136016 | 0.68 | 0.715841 |
Target: 5'- uGUCUgGgGgcucAAGAgCGgCGCGGCCCAc -3' miRNA: 3'- -CAGAgCgCa---UUCUaGCgGCGCCGGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 60008 | 0.68 | 0.725564 |
Target: 5'- ---cCGCGUG-----GCCGCGGCCCAa -3' miRNA: 3'- cagaGCGCAUucuagCGGCGCCGGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 110560 | 0.68 | 0.735209 |
Target: 5'- gGUCgCGCGUAccgcauuguAGAU-GCCGUGGCCgGg -3' miRNA: 3'- -CAGaGCGCAU---------UCUAgCGGCGCCGGgU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 109708 | 0.68 | 0.744768 |
Target: 5'- ---cCGCGgcAGAUUGCC-CGGCCUc -3' miRNA: 3'- cagaGCGCauUCUAGCGGcGCCGGGu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 16819 | 0.68 | 0.744768 |
Target: 5'- ---aCGUGUAAGAgUCGCC-CGaGCCCAu -3' miRNA: 3'- cagaGCGCAUUCU-AGCGGcGC-CGGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 64122 | 0.67 | 0.754233 |
Target: 5'- aGUCUCGUGUcgccgaucAGGcUCGCCaCGGCgCCGc -3' miRNA: 3'- -CAGAGCGCA--------UUCuAGCGGcGCCG-GGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 90436 | 0.67 | 0.754233 |
Target: 5'- -cCUCGcCGUaGAGAUCGCucaggugggcggCGCGGCCg- -3' miRNA: 3'- caGAGC-GCA-UUCUAGCG------------GCGCCGGgu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 71714 | 0.67 | 0.763593 |
Target: 5'- uUCUCGCGUGGGGcUGCaGuCGGCCa- -3' miRNA: 3'- cAGAGCGCAUUCUaGCGgC-GCCGGgu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 112058 | 0.67 | 0.763593 |
Target: 5'- uUCUCGCGgaacGGGUCGCCuuggauGCGuuGCCCc -3' miRNA: 3'- cAGAGCGCau--UCUAGCGG------CGC--CGGGu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 105256 | 0.67 | 0.763593 |
Target: 5'- uUCUCGCGcagcGGcgaGUCGCCaaaGGCCCAa -3' miRNA: 3'- cAGAGCGCau--UC---UAGCGGcg-CCGGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 42431 | 0.67 | 0.772841 |
Target: 5'- aUUUCGCGUucGG-CGCUGCGGCaCUc -3' miRNA: 3'- cAGAGCGCAuuCUaGCGGCGCCG-GGu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 133965 | 0.67 | 0.781968 |
Target: 5'- gGUCuUCGCGgu-GGcguUCGCCgcGCGGUCCAu -3' miRNA: 3'- -CAG-AGCGCauuCU---AGCGG--CGCCGGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 20271 | 0.67 | 0.790966 |
Target: 5'- -cCUCGCGgagGGGAccgucugcgCGCuUGCGGCCCc -3' miRNA: 3'- caGAGCGCa--UUCUa--------GCG-GCGCCGGGu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 90859 | 0.67 | 0.798947 |
Target: 5'- -gCUCGCGUAGGAUCGCgauucugUGcCGGCa-- -3' miRNA: 3'- caGAGCGCAUUCUAGCG-------GC-GCCGggu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 157622 | 0.67 | 0.799827 |
Target: 5'- ---cCGCGgaagAAGAgcuucgccUCGCCGCGGCgCGa -3' miRNA: 3'- cagaGCGCa---UUCU--------AGCGGCGCCGgGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 94398 | 0.67 | 0.799827 |
Target: 5'- -cCUCGUcUAuGAUCagGCCGCGGCgCCGg -3' miRNA: 3'- caGAGCGcAUuCUAG--CGGCGCCG-GGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 145539 | 0.67 | 0.799827 |
Target: 5'- gGUCUCGCGcUAGcGGUaaCCGUGGCCa- -3' miRNA: 3'- -CAGAGCGC-AUU-CUAgcGGCGCCGGgu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 38595 | 0.67 | 0.799827 |
Target: 5'- ---cCGCGgaagAAGAgcuucgccUCGCCGCGGCgCGa -3' miRNA: 3'- cagaGCGCa---UUCU--------AGCGGCGCCGgGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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