miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24478 5' -58.3 NC_005264.1 + 112058 0.67 0.763593
Target:  5'- uUCUCGCGgaacGGGUCGCCuuggauGCGuuGCCCc -3'
miRNA:   3'- cAGAGCGCau--UCUAGCGG------CGC--CGGGu -5'
24478 5' -58.3 NC_005264.1 + 105256 0.67 0.763593
Target:  5'- uUCUCGCGcagcGGcgaGUCGCCaaaGGCCCAa -3'
miRNA:   3'- cAGAGCGCau--UC---UAGCGGcg-CCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 90436 0.67 0.754233
Target:  5'- -cCUCGcCGUaGAGAUCGCucaggugggcggCGCGGCCg- -3'
miRNA:   3'- caGAGC-GCA-UUCUAGCG------------GCGCCGGgu -5'
24478 5' -58.3 NC_005264.1 + 64122 0.67 0.754233
Target:  5'- aGUCUCGUGUcgccgaucAGGcUCGCCaCGGCgCCGc -3'
miRNA:   3'- -CAGAGCGCA--------UUCuAGCGGcGCCG-GGU- -5'
24478 5' -58.3 NC_005264.1 + 109708 0.68 0.744768
Target:  5'- ---cCGCGgcAGAUUGCC-CGGCCUc -3'
miRNA:   3'- cagaGCGCauUCUAGCGGcGCCGGGu -5'
24478 5' -58.3 NC_005264.1 + 16819 0.68 0.744768
Target:  5'- ---aCGUGUAAGAgUCGCC-CGaGCCCAu -3'
miRNA:   3'- cagaGCGCAUUCU-AGCGGcGC-CGGGU- -5'
24478 5' -58.3 NC_005264.1 + 110560 0.68 0.735209
Target:  5'- gGUCgCGCGUAccgcauuguAGAU-GCCGUGGCCgGg -3'
miRNA:   3'- -CAGaGCGCAU---------UCUAgCGGCGCCGGgU- -5'
24478 5' -58.3 NC_005264.1 + 60008 0.68 0.725564
Target:  5'- ---cCGCGUG-----GCCGCGGCCCAa -3'
miRNA:   3'- cagaGCGCAUucuagCGGCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 136016 0.68 0.715841
Target:  5'- uGUCUgGgGgcucAAGAgCGgCGCGGCCCAc -3'
miRNA:   3'- -CAGAgCgCa---UUCUaGCgGCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 87293 0.68 0.706049
Target:  5'- aUC-CGCGUuacGGGAgCGUaCGCGGCCCGa -3'
miRNA:   3'- cAGaGCGCA---UUCUaGCG-GCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 125905 0.69 0.686294
Target:  5'- ----aGCGUAAGAa--CCGCGGCCCGc -3'
miRNA:   3'- cagagCGCAUUCUagcGGCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 107466 0.69 0.666367
Target:  5'- -aUUUGCGU-AGAcCGCCgacGCGGCCCGg -3'
miRNA:   3'- caGAGCGCAuUCUaGCGG---CGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 68423 0.69 0.646332
Target:  5'- -gCUCGCucuGGAcuaccggCGCCGCGGCCUg -3'
miRNA:   3'- caGAGCGcauUCUa------GCGGCGCCGGGu -5'
24478 5' -58.3 NC_005264.1 + 27977 0.69 0.634286
Target:  5'- ---aCGCGUGAcGAcgaccgccguaGCCGCGGCCCAu -3'
miRNA:   3'- cagaGCGCAUU-CUag---------CGGCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 157313 0.7 0.616218
Target:  5'- cUC-CGCGcGAGA-CGCCGCGGCUg- -3'
miRNA:   3'- cAGaGCGCaUUCUaGCGGCGCCGGgu -5'
24478 5' -58.3 NC_005264.1 + 33985 0.7 0.586206
Target:  5'- cUCUCGCGaacg--UGCgGCGGCCCAu -3'
miRNA:   3'- cAGAGCGCauucuaGCGgCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 153012 0.7 0.586206
Target:  5'- cUCUCGCGaacg--UGCgGCGGCCCAu -3'
miRNA:   3'- cAGAGCGCauucuaGCGgCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 124033 0.71 0.576257
Target:  5'- cGUC-CGCGccGGGGUCGCCGCGGaguacgucaCCGg -3'
miRNA:   3'- -CAGaGCGCa-UUCUAGCGGCGCCg--------GGU- -5'
24478 5' -58.3 NC_005264.1 + 5006 0.71 0.576257
Target:  5'- cGUC-CGCGccGGGGUCGCCGCGGaguacgucaCCGg -3'
miRNA:   3'- -CAGaGCGCa-UUCUAGCGGCGCCg--------GGU- -5'
24478 5' -58.3 NC_005264.1 + 14179 0.71 0.576257
Target:  5'- uUCUCGCcucgGUGGcGAUCGCCGUcGCCCc -3'
miRNA:   3'- cAGAGCG----CAUU-CUAGCGGCGcCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.