Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 57681 | 0.71 | 0.556481 |
Target: 5'- aGUUcCGCGUGAGAgaacUCGaCCGCGGCauaCAg -3' miRNA: 3'- -CAGaGCGCAUUCU----AGC-GGCGCCGg--GU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 23084 | 0.71 | 0.546665 |
Target: 5'- uGUCUCGCGUuacgcgauacAAGuauUUGCCGCcggaGGCCCc -3' miRNA: 3'- -CAGAGCGCA----------UUCu--AGCGGCG----CCGGGu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 136685 | 0.71 | 0.527206 |
Target: 5'- ---cCGCGaAAGuccUCGCCGCGGCCUg -3' miRNA: 3'- cagaGCGCaUUCu--AGCGGCGCCGGGu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 142701 | 0.72 | 0.517573 |
Target: 5'- uUUUUGCGcgcGGUaGCCGCGGCCCAg -3' miRNA: 3'- cAGAGCGCauuCUAgCGGCGCCGGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 69750 | 0.74 | 0.406951 |
Target: 5'- uGUCg-GCGagcugagaagccGAGGUCGCCGCGGCCCc -3' miRNA: 3'- -CAGagCGCa-----------UUCUAGCGGCGCCGGGu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 53050 | 0.74 | 0.40022 |
Target: 5'- aGUCgCGCGgagggaagaUAAGGUgGCCGCGGaCCCAg -3' miRNA: 3'- -CAGaGCGC---------AUUCUAgCGGCGCC-GGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 70922 | 0.75 | 0.359804 |
Target: 5'- uUUUUGUGUAuGGUCGCCGCGcccGCCCAu -3' miRNA: 3'- cAGAGCGCAUuCUAGCGGCGC---CGGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 157235 | 0.77 | 0.274881 |
Target: 5'- -gUUCGCGUGGGucuUCGUgGCGGCCCu -3' miRNA: 3'- caGAGCGCAUUCu--AGCGgCGCCGGGu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 122888 | 0.8 | 0.178526 |
Target: 5'- -aCUCGCagccGAGGUCGCCGUGGCCCc -3' miRNA: 3'- caGAGCGca--UUCUAGCGGCGCCGGGu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 3862 | 0.8 | 0.178526 |
Target: 5'- -aCUCGCagccGAGGUCGCCGUGGCCCc -3' miRNA: 3'- caGAGCGca--UUCUAGCGGCGCCGGGu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 49789 | 1.08 | 0.002059 |
Target: 5'- cGUCUCGCGUAAGAUCGCCGCGGCCCAg -3' miRNA: 3'- -CAGAGCGCAUUCUAGCGGCGCCGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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