miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24478 5' -58.3 NC_005264.1 + 3862 0.8 0.178526
Target:  5'- -aCUCGCagccGAGGUCGCCGUGGCCCc -3'
miRNA:   3'- caGAGCGca--UUCUAGCGGCGCCGGGu -5'
24478 5' -58.3 NC_005264.1 + 5006 0.71 0.576257
Target:  5'- cGUC-CGCGccGGGGUCGCCGCGGaguacgucaCCGg -3'
miRNA:   3'- -CAGaGCGCa-UUCUAGCGGCGCCg--------GGU- -5'
24478 5' -58.3 NC_005264.1 + 14179 0.71 0.576257
Target:  5'- uUCUCGCcucgGUGGcGAUCGCCGUcGCCCc -3'
miRNA:   3'- cAGAGCG----CAUU-CUAGCGGCGcCGGGu -5'
24478 5' -58.3 NC_005264.1 + 14656 0.66 0.817101
Target:  5'- -cCUCGCGgcaacggcaGAGAccaugcUGCCGgGGCCCAu -3'
miRNA:   3'- caGAGCGCa--------UUCUa-----GCGGCgCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 16819 0.68 0.744768
Target:  5'- ---aCGUGUAAGAgUCGCC-CGaGCCCAu -3'
miRNA:   3'- cagaGCGCAUUCU-AGCGGcGC-CGGGU- -5'
24478 5' -58.3 NC_005264.1 + 17759 0.66 0.833729
Target:  5'- -gUUCGCGgcaagGAGAgcuGCC-CGGCCCGg -3'
miRNA:   3'- caGAGCGCa----UUCUag-CGGcGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 20271 0.67 0.790966
Target:  5'- -cCUCGCGgagGGGAccgucugcgCGCuUGCGGCCCc -3'
miRNA:   3'- caGAGCGCa--UUCUa--------GCG-GCGCCGGGu -5'
24478 5' -58.3 NC_005264.1 + 23084 0.71 0.546665
Target:  5'- uGUCUCGCGUuacgcgauacAAGuauUUGCCGCcggaGGCCCc -3'
miRNA:   3'- -CAGAGCGCA----------UUCu--AGCGGCG----CCGGGu -5'
24478 5' -58.3 NC_005264.1 + 27977 0.69 0.634286
Target:  5'- ---aCGCGUGAcGAcgaccgccguaGCCGCGGCCCAu -3'
miRNA:   3'- cagaGCGCAUU-CUag---------CGGCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 33985 0.7 0.586206
Target:  5'- cUCUCGCGaacg--UGCgGCGGCCCAu -3'
miRNA:   3'- cAGAGCGCauucuaGCGgCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 38595 0.67 0.799827
Target:  5'- ---cCGCGgaagAAGAgcuucgccUCGCCGCGGCgCGa -3'
miRNA:   3'- cagaGCGCa---UUCU--------AGCGGCGCCGgGU- -5'
24478 5' -58.3 NC_005264.1 + 42431 0.67 0.772841
Target:  5'- aUUUCGCGUucGG-CGCUGCGGCaCUc -3'
miRNA:   3'- cAGAGCGCAuuCUaGCGGCGCCG-GGu -5'
24478 5' -58.3 NC_005264.1 + 49789 1.08 0.002059
Target:  5'- cGUCUCGCGUAAGAUCGCCGCGGCCCAg -3'
miRNA:   3'- -CAGAGCGCAUUCUAGCGGCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 53050 0.74 0.40022
Target:  5'- aGUCgCGCGgagggaagaUAAGGUgGCCGCGGaCCCAg -3'
miRNA:   3'- -CAGaGCGC---------AUUCUAgCGGCGCC-GGGU- -5'
24478 5' -58.3 NC_005264.1 + 57681 0.71 0.556481
Target:  5'- aGUUcCGCGUGAGAgaacUCGaCCGCGGCauaCAg -3'
miRNA:   3'- -CAGaGCGCAUUCU----AGC-GGCGCCGg--GU- -5'
24478 5' -58.3 NC_005264.1 + 60008 0.68 0.725564
Target:  5'- ---cCGCGUG-----GCCGCGGCCCAa -3'
miRNA:   3'- cagaGCGCAUucuagCGGCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 63625 0.66 0.825499
Target:  5'- cGUUUCGCGaGAGAagCgGCCGCggaGGCCUg -3'
miRNA:   3'- -CAGAGCGCaUUCUa-G-CGGCG---CCGGGu -5'
24478 5' -58.3 NC_005264.1 + 64122 0.67 0.754233
Target:  5'- aGUCUCGUGUcgccgaucAGGcUCGCCaCGGCgCCGc -3'
miRNA:   3'- -CAGAGCGCA--------UUCuAGCGGcGCCG-GGU- -5'
24478 5' -58.3 NC_005264.1 + 66613 0.66 0.849651
Target:  5'- ---cCGCGUugccGGcgcCGUCGCGGCCCGa -3'
miRNA:   3'- cagaGCGCAu---UCua-GCGGCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 68423 0.69 0.646332
Target:  5'- -gCUCGCucuGGAcuaccggCGCCGCGGCCUg -3'
miRNA:   3'- caGAGCGcauUCUa------GCGGCGCCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.