Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 69750 | 0.74 | 0.406951 |
Target: 5'- uGUCg-GCGagcugagaagccGAGGUCGCCGCGGCCCc -3' miRNA: 3'- -CAGagCGCa-----------UUCUAGCGGCGCCGGGu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 70922 | 0.75 | 0.359804 |
Target: 5'- uUUUUGUGUAuGGUCGCCGCGcccGCCCAu -3' miRNA: 3'- cAGAGCGCAUuCUAGCGGCGC---CGGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 71714 | 0.67 | 0.763593 |
Target: 5'- uUCUCGCGUGGGGcUGCaGuCGGCCa- -3' miRNA: 3'- cAGAGCGCAUUCUaGCGgC-GCCGGgu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 87293 | 0.68 | 0.706049 |
Target: 5'- aUC-CGCGUuacGGGAgCGUaCGCGGCCCGa -3' miRNA: 3'- cAGaGCGCA---UUCUaGCG-GCGCCGGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 90436 | 0.67 | 0.754233 |
Target: 5'- -cCUCGcCGUaGAGAUCGCucaggugggcggCGCGGCCg- -3' miRNA: 3'- caGAGC-GCA-UUCUAGCG------------GCGCCGGgu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 90859 | 0.67 | 0.798947 |
Target: 5'- -gCUCGCGUAGGAUCGCgauucugUGcCGGCa-- -3' miRNA: 3'- caGAGCGCAUUCUAGCG-------GC-GCCGggu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 94398 | 0.67 | 0.799827 |
Target: 5'- -cCUCGUcUAuGAUCagGCCGCGGCgCCGg -3' miRNA: 3'- caGAGCGcAUuCUAG--CGGCGCCG-GGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 94503 | 0.66 | 0.817101 |
Target: 5'- -gCUCGCGUuAGugcaGCCGuCGGCCa- -3' miRNA: 3'- caGAGCGCAuUCuag-CGGC-GCCGGgu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 105256 | 0.67 | 0.763593 |
Target: 5'- uUCUCGCGcagcGGcgaGUCGCCaaaGGCCCAa -3' miRNA: 3'- cAGAGCGCau--UC---UAGCGGcg-CCGGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 107466 | 0.69 | 0.666367 |
Target: 5'- -aUUUGCGU-AGAcCGCCgacGCGGCCCGg -3' miRNA: 3'- caGAGCGCAuUCUaGCGG---CGCCGGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 109708 | 0.68 | 0.744768 |
Target: 5'- ---cCGCGgcAGAUUGCC-CGGCCUc -3' miRNA: 3'- cagaGCGCauUCUAGCGGcGCCGGGu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 110560 | 0.68 | 0.735209 |
Target: 5'- gGUCgCGCGUAccgcauuguAGAU-GCCGUGGCCgGg -3' miRNA: 3'- -CAGaGCGCAU---------UCUAgCGGCGCCGGgU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 112058 | 0.67 | 0.763593 |
Target: 5'- uUCUCGCGgaacGGGUCGCCuuggauGCGuuGCCCc -3' miRNA: 3'- cAGAGCGCau--UCUAGCGG------CGC--CGGGu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 112332 | 0.66 | 0.844952 |
Target: 5'- -gCUCGUGUucggcuucGAGGgcagcuuuggggauuUUGCCGCGGUCCu -3' miRNA: 3'- caGAGCGCA--------UUCU---------------AGCGGCGCCGGGu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 121435 | 0.66 | 0.817101 |
Target: 5'- uUCUgGCGUguccGAGAcacaGCgCGCGGCCUAc -3' miRNA: 3'- cAGAgCGCA----UUCUag--CG-GCGCCGGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 122888 | 0.8 | 0.178526 |
Target: 5'- -aCUCGCagccGAGGUCGCCGUGGCCCc -3' miRNA: 3'- caGAGCGca--UUCUAGCGGCGCCGGGu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 124033 | 0.71 | 0.576257 |
Target: 5'- cGUC-CGCGccGGGGUCGCCGCGGaguacgucaCCGg -3' miRNA: 3'- -CAGaGCGCa-UUCUAGCGGCGCCg--------GGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 125905 | 0.69 | 0.686294 |
Target: 5'- ----aGCGUAAGAa--CCGCGGCCCGc -3' miRNA: 3'- cagagCGCAUUCUagcGGCGCCGGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 133965 | 0.67 | 0.781968 |
Target: 5'- gGUCuUCGCGgu-GGcguUCGCCgcGCGGUCCAu -3' miRNA: 3'- -CAG-AGCGCauuCU---AGCGG--CGCCGGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 135960 | 0.66 | 0.817101 |
Target: 5'- uUCUCGCGUAuucuUUGuuGCGGUCgGg -3' miRNA: 3'- cAGAGCGCAUucu-AGCggCGCCGGgU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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