Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 159674 | 0.66 | 0.808541 |
Target: 5'- cGUCgcgCGCGgaGGGUCGCCGUuucGGUugCCGc -3' miRNA: 3'- -CAGa--GCGCauUCUAGCGGCG---CCG--GGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 157622 | 0.67 | 0.799827 |
Target: 5'- ---cCGCGgaagAAGAgcuucgccUCGCCGCGGCgCGa -3' miRNA: 3'- cagaGCGCa---UUCU--------AGCGGCGCCGgGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 157313 | 0.7 | 0.616218 |
Target: 5'- cUC-CGCGcGAGA-CGCCGCGGCUg- -3' miRNA: 3'- cAGaGCGCaUUCUaGCGGCGCCGGgu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 157235 | 0.77 | 0.274881 |
Target: 5'- -gUUCGCGUGGGucuUCGUgGCGGCCCu -3' miRNA: 3'- caGAGCGCAUUCu--AGCGgCGCCGGGu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 154883 | 0.66 | 0.808541 |
Target: 5'- cUCUaggcaGCGacaAAGA-CGCCGCGGCCg- -3' miRNA: 3'- cAGAg----CGCa--UUCUaGCGGCGCCGGgu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 153012 | 0.7 | 0.586206 |
Target: 5'- cUCUCGCGaacg--UGCgGCGGCCCAu -3' miRNA: 3'- cAGAGCGCauucuaGCGgCGCCGGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 145539 | 0.67 | 0.799827 |
Target: 5'- gGUCUCGCGcUAGcGGUaaCCGUGGCCa- -3' miRNA: 3'- -CAGAGCGC-AUU-CUAgcGGCGCCGGgu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 142701 | 0.72 | 0.517573 |
Target: 5'- uUUUUGCGcgcGGUaGCCGCGGCCCAg -3' miRNA: 3'- cAGAGCGCauuCUAgCGGCGCCGGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 140059 | 0.66 | 0.817101 |
Target: 5'- ----gGCGUGAGcaguGUCGCCGCGcCCCu -3' miRNA: 3'- cagagCGCAUUC----UAGCGGCGCcGGGu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 136685 | 0.71 | 0.527206 |
Target: 5'- ---cCGCGaAAGuccUCGCCGCGGCCUg -3' miRNA: 3'- cagaGCGCaUUCu--AGCGGCGCCGGGu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 136016 | 0.68 | 0.715841 |
Target: 5'- uGUCUgGgGgcucAAGAgCGgCGCGGCCCAc -3' miRNA: 3'- -CAGAgCgCa---UUCUaGCgGCGCCGGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 135960 | 0.66 | 0.817101 |
Target: 5'- uUCUCGCGUAuucuUUGuuGCGGUCgGg -3' miRNA: 3'- cAGAGCGCAUucu-AGCggCGCCGGgU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 133965 | 0.67 | 0.781968 |
Target: 5'- gGUCuUCGCGgu-GGcguUCGCCgcGCGGUCCAu -3' miRNA: 3'- -CAG-AGCGCauuCU---AGCGG--CGCCGGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 125905 | 0.69 | 0.686294 |
Target: 5'- ----aGCGUAAGAa--CCGCGGCCCGc -3' miRNA: 3'- cagagCGCAUUCUagcGGCGCCGGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 124033 | 0.71 | 0.576257 |
Target: 5'- cGUC-CGCGccGGGGUCGCCGCGGaguacgucaCCGg -3' miRNA: 3'- -CAGaGCGCa-UUCUAGCGGCGCCg--------GGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 122888 | 0.8 | 0.178526 |
Target: 5'- -aCUCGCagccGAGGUCGCCGUGGCCCc -3' miRNA: 3'- caGAGCGca--UUCUAGCGGCGCCGGGu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 121435 | 0.66 | 0.817101 |
Target: 5'- uUCUgGCGUguccGAGAcacaGCgCGCGGCCUAc -3' miRNA: 3'- cAGAgCGCA----UUCUag--CG-GCGCCGGGU- -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 112332 | 0.66 | 0.844952 |
Target: 5'- -gCUCGUGUucggcuucGAGGgcagcuuuggggauuUUGCCGCGGUCCu -3' miRNA: 3'- caGAGCGCA--------UUCU---------------AGCGGCGCCGGGu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 112058 | 0.67 | 0.763593 |
Target: 5'- uUCUCGCGgaacGGGUCGCCuuggauGCGuuGCCCc -3' miRNA: 3'- cAGAGCGCau--UCUAGCGG------CGC--CGGGu -5' |
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24478 | 5' | -58.3 | NC_005264.1 | + | 110560 | 0.68 | 0.735209 |
Target: 5'- gGUCgCGCGUAccgcauuguAGAU-GCCGUGGCCgGg -3' miRNA: 3'- -CAGaGCGCAU---------UCUAgCGGCGCCGGgU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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