Results 1 - 20 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 63625 | 0.66 | 0.825499 |
Target: 5'- cGUUUCGCGaGAGAagCgGCCGCggaGGCCUg -3' miRNA: 3'- -CAGAGCGCaUUCUa-G-CGGCG---CCGGGu -5' |
|||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 64122 | 0.67 | 0.754233 |
Target: 5'- aGUCUCGUGUcgccgaucAGGcUCGCCaCGGCgCCGc -3' miRNA: 3'- -CAGAGCGCA--------UUCuAGCGGcGCCG-GGU- -5' |
|||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 71714 | 0.67 | 0.763593 |
Target: 5'- uUCUCGCGUGGGGcUGCaGuCGGCCa- -3' miRNA: 3'- cAGAGCGCAUUCUaGCGgC-GCCGGgu -5' |
|||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 42431 | 0.67 | 0.772841 |
Target: 5'- aUUUCGCGUucGG-CGCUGCGGCaCUc -3' miRNA: 3'- cAGAGCGCAuuCUaGCGGCGCCG-GGu -5' |
|||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 20271 | 0.67 | 0.790966 |
Target: 5'- -cCUCGCGgagGGGAccgucugcgCGCuUGCGGCCCc -3' miRNA: 3'- caGAGCGCa--UUCUa--------GCG-GCGCCGGGu -5' |
|||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 145539 | 0.67 | 0.799827 |
Target: 5'- gGUCUCGCGcUAGcGGUaaCCGUGGCCa- -3' miRNA: 3'- -CAGAGCGC-AUU-CUAgcGGCGCCGGgu -5' |
|||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 157622 | 0.67 | 0.799827 |
Target: 5'- ---cCGCGgaagAAGAgcuucgccUCGCCGCGGCgCGa -3' miRNA: 3'- cagaGCGCa---UUCU--------AGCGGCGCCGgGU- -5' |
|||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 159674 | 0.66 | 0.808541 |
Target: 5'- cGUCgcgCGCGgaGGGUCGCCGUuucGGUugCCGc -3' miRNA: 3'- -CAGa--GCGCauUCUAGCGGCG---CCG--GGU- -5' |
|||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 14656 | 0.66 | 0.817101 |
Target: 5'- -cCUCGCGgcaacggcaGAGAccaugcUGCCGgGGCCCAu -3' miRNA: 3'- caGAGCGCa--------UUCUa-----GCGGCgCCGGGU- -5' |
|||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 109708 | 0.68 | 0.744768 |
Target: 5'- ---cCGCGgcAGAUUGCC-CGGCCUc -3' miRNA: 3'- cagaGCGCauUCUAGCGGcGCCGGGu -5' |
|||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 110560 | 0.68 | 0.735209 |
Target: 5'- gGUCgCGCGUAccgcauuguAGAU-GCCGUGGCCgGg -3' miRNA: 3'- -CAGaGCGCAU---------UCUAgCGGCGCCGGgU- -5' |
|||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 60008 | 0.68 | 0.725564 |
Target: 5'- ---cCGCGUG-----GCCGCGGCCCAa -3' miRNA: 3'- cagaGCGCAUucuagCGGCGCCGGGU- -5' |
|||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 136685 | 0.71 | 0.527206 |
Target: 5'- ---cCGCGaAAGuccUCGCCGCGGCCUg -3' miRNA: 3'- cagaGCGCaUUCu--AGCGGCGCCGGGu -5' |
|||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 124033 | 0.71 | 0.576257 |
Target: 5'- cGUC-CGCGccGGGGUCGCCGCGGaguacgucaCCGg -3' miRNA: 3'- -CAGaGCGCa-UUCUAGCGGCGCCg--------GGU- -5' |
|||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 153012 | 0.7 | 0.586206 |
Target: 5'- cUCUCGCGaacg--UGCgGCGGCCCAu -3' miRNA: 3'- cAGAGCGCauucuaGCGgCGCCGGGU- -5' |
|||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 27977 | 0.69 | 0.634286 |
Target: 5'- ---aCGCGUGAcGAcgaccgccguaGCCGCGGCCCAu -3' miRNA: 3'- cagaGCGCAUU-CUag---------CGGCGCCGGGU- -5' |
|||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 68423 | 0.69 | 0.646332 |
Target: 5'- -gCUCGCucuGGAcuaccggCGCCGCGGCCUg -3' miRNA: 3'- caGAGCGcauUCUa------GCGGCGCCGGGu -5' |
|||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 107466 | 0.69 | 0.666367 |
Target: 5'- -aUUUGCGU-AGAcCGCCgacGCGGCCCGg -3' miRNA: 3'- caGAGCGCAuUCUaGCGG---CGCCGGGU- -5' |
|||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 87293 | 0.68 | 0.706049 |
Target: 5'- aUC-CGCGUuacGGGAgCGUaCGCGGCCCGa -3' miRNA: 3'- cAGaGCGCA---UUCUaGCG-GCGCCGGGU- -5' |
|||||||
24478 | 5' | -58.3 | NC_005264.1 | + | 136016 | 0.68 | 0.715841 |
Target: 5'- uGUCUgGgGgcucAAGAgCGgCGCGGCCCAc -3' miRNA: 3'- -CAGAgCgCa---UUCUaGCgGCGCCGGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home