miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24478 5' -58.3 NC_005264.1 + 140059 0.66 0.817101
Target:  5'- ----gGCGUGAGcaguGUCGCCGCGcCCCu -3'
miRNA:   3'- cagagCGCAUUC----UAGCGGCGCcGGGu -5'
24478 5' -58.3 NC_005264.1 + 5006 0.71 0.576257
Target:  5'- cGUC-CGCGccGGGGUCGCCGCGGaguacgucaCCGg -3'
miRNA:   3'- -CAGaGCGCa-UUCUAGCGGCGCCg--------GGU- -5'
24478 5' -58.3 NC_005264.1 + 23084 0.71 0.546665
Target:  5'- uGUCUCGCGUuacgcgauacAAGuauUUGCCGCcggaGGCCCc -3'
miRNA:   3'- -CAGAGCGCA----------UUCu--AGCGGCG----CCGGGu -5'
24478 5' -58.3 NC_005264.1 + 49789 1.08 0.002059
Target:  5'- cGUCUCGCGUAAGAUCGCCGCGGCCCAg -3'
miRNA:   3'- -CAGAGCGCAUUCUAGCGGCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 154883 0.66 0.808541
Target:  5'- cUCUaggcaGCGacaAAGA-CGCCGCGGCCg- -3'
miRNA:   3'- cAGAg----CGCa--UUCUaGCGGCGCCGGgu -5'
24478 5' -58.3 NC_005264.1 + 94398 0.67 0.799827
Target:  5'- -cCUCGUcUAuGAUCagGCCGCGGCgCCGg -3'
miRNA:   3'- caGAGCGcAUuCUAG--CGGCGCCG-GGU- -5'
24478 5' -58.3 NC_005264.1 + 90859 0.67 0.798947
Target:  5'- -gCUCGCGUAGGAUCGCgauucugUGcCGGCa-- -3'
miRNA:   3'- caGAGCGCAUUCUAGCG-------GC-GCCGggu -5'
24478 5' -58.3 NC_005264.1 + 133965 0.67 0.781968
Target:  5'- gGUCuUCGCGgu-GGcguUCGCCgcGCGGUCCAu -3'
miRNA:   3'- -CAG-AGCGCauuCU---AGCGG--CGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 90436 0.67 0.754233
Target:  5'- -cCUCGcCGUaGAGAUCGCucaggugggcggCGCGGCCg- -3'
miRNA:   3'- caGAGC-GCA-UUCUAGCG------------GCGCCGGgu -5'
24478 5' -58.3 NC_005264.1 + 14179 0.71 0.576257
Target:  5'- uUCUCGCcucgGUGGcGAUCGCCGUcGCCCc -3'
miRNA:   3'- cAGAGCG----CAUU-CUAGCGGCGcCGGGu -5'
24478 5' -58.3 NC_005264.1 + 125905 0.69 0.686294
Target:  5'- ----aGCGUAAGAa--CCGCGGCCCGc -3'
miRNA:   3'- cagagCGCAUUCUagcGGCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 105256 0.67 0.763593
Target:  5'- uUCUCGCGcagcGGcgaGUCGCCaaaGGCCCAa -3'
miRNA:   3'- cAGAGCGCau--UC---UAGCGGcg-CCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 135960 0.66 0.817101
Target:  5'- uUCUCGCGUAuucuUUGuuGCGGUCgGg -3'
miRNA:   3'- cAGAGCGCAUucu-AGCggCGCCGGgU- -5'
24478 5' -58.3 NC_005264.1 + 157313 0.7 0.616218
Target:  5'- cUC-CGCGcGAGA-CGCCGCGGCUg- -3'
miRNA:   3'- cAGaGCGCaUUCUaGCGGCGCCGGgu -5'
24478 5' -58.3 NC_005264.1 + 121435 0.66 0.817101
Target:  5'- uUCUgGCGUguccGAGAcacaGCgCGCGGCCUAc -3'
miRNA:   3'- cAGAgCGCA----UUCUag--CG-GCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 112058 0.67 0.763593
Target:  5'- uUCUCGCGgaacGGGUCGCCuuggauGCGuuGCCCc -3'
miRNA:   3'- cAGAGCGCau--UCUAGCGG------CGC--CGGGu -5'
24478 5' -58.3 NC_005264.1 + 33985 0.7 0.586206
Target:  5'- cUCUCGCGaacg--UGCgGCGGCCCAu -3'
miRNA:   3'- cAGAGCGCauucuaGCGgCGCCGGGU- -5'
24478 5' -58.3 NC_005264.1 + 57681 0.71 0.556481
Target:  5'- aGUUcCGCGUGAGAgaacUCGaCCGCGGCauaCAg -3'
miRNA:   3'- -CAGaGCGCAUUCU----AGC-GGCGCCGg--GU- -5'
24478 5' -58.3 NC_005264.1 + 94503 0.66 0.817101
Target:  5'- -gCUCGCGUuAGugcaGCCGuCGGCCa- -3'
miRNA:   3'- caGAGCGCAuUCuag-CGGC-GCCGGgu -5'
24478 5' -58.3 NC_005264.1 + 38595 0.67 0.799827
Target:  5'- ---cCGCGgaagAAGAgcuucgccUCGCCGCGGCgCGa -3'
miRNA:   3'- cagaGCGCa---UUCU--------AGCGGCGCCGgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.