miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24479 3' -51 NC_005264.1 + 75848 0.66 0.992676
Target:  5'- -----uGUGCUUgacuggccccuugaaGGcGCGCUUACGCCCc -3'
miRNA:   3'- uuuuagUACGAG---------------UU-CGCGAGUGCGGG- -5'
24479 3' -51 NC_005264.1 + 31594 0.66 0.992247
Target:  5'- cGAGUC-UGCUCucuggcgaggcGGCGCgCAuCGCCCu -3'
miRNA:   3'- uUUUAGuACGAGu----------UCGCGaGU-GCGGG- -5'
24479 3' -51 NC_005264.1 + 96331 0.66 0.992247
Target:  5'- cGAAAgCGaGCUCGucgAGCGCgccgCGCaGCCCg -3'
miRNA:   3'- -UUUUaGUaCGAGU---UCGCGa---GUG-CGGG- -5'
24479 3' -51 NC_005264.1 + 150621 0.66 0.992247
Target:  5'- cGAGUC-UGCUCucuggcgaggcGGCGCgCAuCGCCCu -3'
miRNA:   3'- uUUUAGuACGAGu----------UCGCGaGU-GCGGG- -5'
24479 3' -51 NC_005264.1 + 17644 0.66 0.991085
Target:  5'- --uGUUAUGCUCAGGUG-UCG-GCCUa -3'
miRNA:   3'- uuuUAGUACGAGUUCGCgAGUgCGGG- -5'
24479 3' -51 NC_005264.1 + 113137 0.66 0.991085
Target:  5'- uGGAUUAUGCUCGGGUagagGCUCGCaaaGUCa -3'
miRNA:   3'- uUUUAGUACGAGUUCG----CGAGUG---CGGg -5'
24479 3' -51 NC_005264.1 + 82073 0.66 0.991085
Target:  5'- cAGAUCucUGCgcggaggggUCGAGCGUUCcCGCCUu -3'
miRNA:   3'- uUUUAGu-ACG---------AGUUCGCGAGuGCGGG- -5'
24479 3' -51 NC_005264.1 + 142679 0.66 0.990325
Target:  5'- --cGUCGUGCcgCGaucuugggcgccggcGGCGCgcCACGCCUg -3'
miRNA:   3'- uuuUAGUACGa-GU---------------UCGCGa-GUGCGGG- -5'
24479 3' -51 NC_005264.1 + 49134 0.66 0.98979
Target:  5'- ---uUCGUGCg-AGGCGCcUC-UGCCCa -3'
miRNA:   3'- uuuuAGUACGagUUCGCG-AGuGCGGG- -5'
24479 3' -51 NC_005264.1 + 72806 0.66 0.98979
Target:  5'- cAAGAUCuUGC-CGAGgaGCUCGgaGCCCa -3'
miRNA:   3'- -UUUUAGuACGaGUUCg-CGAGUg-CGGG- -5'
24479 3' -51 NC_005264.1 + 152105 0.66 0.986764
Target:  5'- -cGAUCAUGC-CGucGGUGUcCGCGCCg -3'
miRNA:   3'- uuUUAGUACGaGU--UCGCGaGUGCGGg -5'
24479 3' -51 NC_005264.1 + 64135 0.67 0.985013
Target:  5'- -cGAUCAgGCUCGccacGGCGC-CGCGaUCCg -3'
miRNA:   3'- uuUUAGUaCGAGU----UCGCGaGUGC-GGG- -5'
24479 3' -51 NC_005264.1 + 56591 0.67 0.985013
Target:  5'- --cGUCAgcagGCgCGAGCGCcUCGCGaCCg -3'
miRNA:   3'- uuuUAGUa---CGaGUUCGCG-AGUGCgGG- -5'
24479 3' -51 NC_005264.1 + 106429 0.67 0.985013
Target:  5'- -------aGCUCGacGGCGC-CGCGCUCg -3'
miRNA:   3'- uuuuaguaCGAGU--UCGCGaGUGCGGG- -5'
24479 3' -51 NC_005264.1 + 94479 0.67 0.985013
Target:  5'- cGAGGUCGUGCgcacCAGGaacauGCUCGCGUUa -3'
miRNA:   3'- -UUUUAGUACGa---GUUCg----CGAGUGCGGg -5'
24479 3' -51 NC_005264.1 + 110753 0.67 0.984829
Target:  5'- --cGUCGccCUCAAGCGCaacagcagcucuuUCGCGCCa -3'
miRNA:   3'- uuuUAGUacGAGUUCGCG-------------AGUGCGGg -5'
24479 3' -51 NC_005264.1 + 103519 0.67 0.983091
Target:  5'- ---uUCAUGUacauggacgugUCGAGCGCUaacgaaGgGCCCa -3'
miRNA:   3'- uuuuAGUACG-----------AGUUCGCGAg-----UgCGGG- -5'
24479 3' -51 NC_005264.1 + 21252 0.67 0.980988
Target:  5'- -------gGCUCGAGUGUgCGCGCCg -3'
miRNA:   3'- uuuuaguaCGAGUUCGCGaGUGCGGg -5'
24479 3' -51 NC_005264.1 + 155914 0.67 0.980988
Target:  5'- --uAUUA-GCUCAAGacaaUCGCGCCCa -3'
miRNA:   3'- uuuUAGUaCGAGUUCgcg-AGUGCGGG- -5'
24479 3' -51 NC_005264.1 + 120092 0.67 0.980988
Target:  5'- gGGAGUCGUGCccacCGGGUGC-CGCGCa- -3'
miRNA:   3'- -UUUUAGUACGa---GUUCGCGaGUGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.