miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24479 3' -51 NC_005264.1 + 3293 0.69 0.952562
Target:  5'- cAGAGUCGUgaGCUCGcGCGggaUCGCGCgCCg -3'
miRNA:   3'- -UUUUAGUA--CGAGUuCGCg--AGUGCG-GG- -5'
24479 3' -51 NC_005264.1 + 6125 0.67 0.978696
Target:  5'- --cAUCAggUGCgggagggCGAGgGCcgCGCGCCCg -3'
miRNA:   3'- uuuUAGU--ACGa------GUUCgCGa-GUGCGGG- -5'
24479 3' -51 NC_005264.1 + 9497 0.75 0.69864
Target:  5'- cGAGUCAgccaGCgUCAGGCGCg-GCGCCCu -3'
miRNA:   3'- uUUUAGUa---CG-AGUUCGCGagUGCGGG- -5'
24479 3' -51 NC_005264.1 + 13356 0.69 0.938769
Target:  5'- cGAAUCGagcgGCUCGAGCGaCUCGucuaGCUCa -3'
miRNA:   3'- uUUUAGUa---CGAGUUCGC-GAGUg---CGGG- -5'
24479 3' -51 NC_005264.1 + 16492 0.71 0.883354
Target:  5'- cGAGUCAcaUGCgUCAuucGGCGCgCACGCCg -3'
miRNA:   3'- uUUUAGU--ACG-AGU---UCGCGaGUGCGGg -5'
24479 3' -51 NC_005264.1 + 16523 0.71 0.897469
Target:  5'- gAGAGUCAggauaGCUCuuAGCGCUUGCGCg- -3'
miRNA:   3'- -UUUUAGUa----CGAGu-UCGCGAGUGCGgg -5'
24479 3' -51 NC_005264.1 + 17644 0.66 0.991085
Target:  5'- --uGUUAUGCUCAGGUG-UCG-GCCUa -3'
miRNA:   3'- uuuUAGUACGAGUUCGCgAGUgCGGG- -5'
24479 3' -51 NC_005264.1 + 21252 0.67 0.980988
Target:  5'- -------gGCUCGAGUGUgCGCGCCg -3'
miRNA:   3'- uuuuaguaCGAGUUCGCGaGUGCGGg -5'
24479 3' -51 NC_005264.1 + 22125 0.67 0.976205
Target:  5'- -cAGUUggGCUucaaCGAGCGCgacgCGCGCCUu -3'
miRNA:   3'- uuUUAGuaCGA----GUUCGCGa---GUGCGGG- -5'
24479 3' -51 NC_005264.1 + 24495 0.67 0.978696
Target:  5'- -uAGUCGcGUUCGGGCGCcuugucgcgCACGCgCCa -3'
miRNA:   3'- uuUUAGUaCGAGUUCGCGa--------GUGCG-GG- -5'
24479 3' -51 NC_005264.1 + 25008 0.74 0.740182
Target:  5'- -------gGCUCAGGCGCUgCAUGCCUc -3'
miRNA:   3'- uuuuaguaCGAGUUCGCGA-GUGCGGG- -5'
24479 3' -51 NC_005264.1 + 25560 0.68 0.964095
Target:  5'- --uGUCGcGCUCGuccaggGGaGCUCugGCCCa -3'
miRNA:   3'- uuuUAGUaCGAGU------UCgCGAGugCGGG- -5'
24479 3' -51 NC_005264.1 + 25788 0.67 0.978696
Target:  5'- uGGAUC-UGCUCAcGGCggucaGCUUugGCCUa -3'
miRNA:   3'- uUUUAGuACGAGU-UCG-----CGAGugCGGG- -5'
24479 3' -51 NC_005264.1 + 25795 0.69 0.94822
Target:  5'- ---cUCGUGCUCcuauauGGgGCUUACGCUg -3'
miRNA:   3'- uuuuAGUACGAGu-----UCgCGAGUGCGGg -5'
24479 3' -51 NC_005264.1 + 30826 0.74 0.77029
Target:  5'- ---cUCGUGCUCGAacGgGCUCGCGUCg -3'
miRNA:   3'- uuuuAGUACGAGUU--CgCGAGUGCGGg -5'
24479 3' -51 NC_005264.1 + 31594 0.66 0.992247
Target:  5'- cGAGUC-UGCUCucuggcgaggcGGCGCgCAuCGCCCu -3'
miRNA:   3'- uUUUAGuACGAGu----------UCGCGaGU-GCGGG- -5'
24479 3' -51 NC_005264.1 + 32862 0.68 0.958987
Target:  5'- -cGAUCAUGUUCGAGgugaaccuuggagGCagGCGCCCa -3'
miRNA:   3'- uuUUAGUACGAGUUCg------------CGagUGCGGG- -5'
24479 3' -51 NC_005264.1 + 33501 0.68 0.960495
Target:  5'- ------uUGCUCAGuGCGCgUCgcuGCGCCCg -3'
miRNA:   3'- uuuuaguACGAGUU-CGCG-AG---UGCGGG- -5'
24479 3' -51 NC_005264.1 + 37253 0.71 0.890536
Target:  5'- ---uUCAUGCUCcaggauacuuGGGCGCgaugC-CGCCCa -3'
miRNA:   3'- uuuuAGUACGAG----------UUCGCGa---GuGCGGG- -5'
24479 3' -51 NC_005264.1 + 39459 0.68 0.960495
Target:  5'- gGAAAgCAUGCUgCGAcgcGCGCUCAgcCGCCa -3'
miRNA:   3'- -UUUUaGUACGA-GUU---CGCGAGU--GCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.