miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24479 5' -51.7 NC_005264.1 + 34117 0.66 0.992601
Target:  5'- --cGGCGCGAaaCAGcGUCGagGCGCGAGc -3'
miRNA:   3'- ccuUUGCGCU--GUC-CAGUa-CGUGCUCa -5'
24479 5' -51.7 NC_005264.1 + 36168 0.66 0.992601
Target:  5'- gGGAAGCGCGACGGGaCGauCGCa--- -3'
miRNA:   3'- -CCUUUGCGCUGUCCaGUacGUGcuca -5'
24479 5' -51.7 NC_005264.1 + 153144 0.66 0.992601
Target:  5'- --cGGCGCGAaaCAGcGUCGagGCGCGAGc -3'
miRNA:   3'- ccuUUGCGCU--GUC-CAGUa-CGUGCUCa -5'
24479 5' -51.7 NC_005264.1 + 121913 0.66 0.991512
Target:  5'- gGGGcgcGGCGCGGCGGGgaggGCgacgGCGAGa -3'
miRNA:   3'- -CCU---UUGCGCUGUCCaguaCG----UGCUCa -5'
24479 5' -51.7 NC_005264.1 + 103502 0.66 0.991512
Target:  5'- uGAucCGCGACAGGcuguUCAUGUACa--- -3'
miRNA:   3'- cCUuuGCGCUGUCC----AGUACGUGcuca -5'
24479 5' -51.7 NC_005264.1 + 17691 0.66 0.991512
Target:  5'- cGAGGcCGCGGCGGcUCGUGU-CGGGUg -3'
miRNA:   3'- cCUUU-GCGCUGUCcAGUACGuGCUCA- -5'
24479 5' -51.7 NC_005264.1 + 2887 0.66 0.991512
Target:  5'- gGGGcgcGGCGCGGCGGGgaggGCgacgGCGAGa -3'
miRNA:   3'- -CCU---UUGCGCUGUCCaguaCG----UGCUCa -5'
24479 5' -51.7 NC_005264.1 + 153356 0.66 0.9908
Target:  5'- gGGGGAgGCGGCAGa-CAagacgcgcgaagcguUGCGCGAGg -3'
miRNA:   3'- -CCUUUgCGCUGUCcaGU---------------ACGUGCUCa -5'
24479 5' -51.7 NC_005264.1 + 74949 0.66 0.9903
Target:  5'- cGGGACGCGACgAGGguggCGUcGUacuGCGGGUa -3'
miRNA:   3'- cCUUUGCGCUG-UCCa---GUA-CG---UGCUCA- -5'
24479 5' -51.7 NC_005264.1 + 53361 0.66 0.9903
Target:  5'- aGGAcGGCGUGGCaAGcGUgAUGCGCGAc- -3'
miRNA:   3'- -CCU-UUGCGCUG-UC-CAgUACGUGCUca -5'
24479 5' -51.7 NC_005264.1 + 101470 0.66 0.98951
Target:  5'- gGGAGAcCGCGACcccgacgcuuugacGGcCAUGCGgGAGUu -3'
miRNA:   3'- -CCUUU-GCGCUGu-------------CCaGUACGUgCUCA- -5'
24479 5' -51.7 NC_005264.1 + 83177 0.66 0.988957
Target:  5'- gGGAGAauuugucaGCGGCAGG-CGcgGCGCGAa- -3'
miRNA:   3'- -CCUUUg-------CGCUGUCCaGUa-CGUGCUca -5'
24479 5' -51.7 NC_005264.1 + 100865 0.66 0.988957
Target:  5'- uGGGAccaggcGCGCGACgAGGgggaAUGCuACGGGg -3'
miRNA:   3'- -CCUU------UGCGCUG-UCCag--UACG-UGCUCa -5'
24479 5' -51.7 NC_005264.1 + 114289 0.66 0.987472
Target:  5'- cGGAcgacgAAgGCGACGGGggc-GCGCGGGa -3'
miRNA:   3'- -CCU-----UUgCGCUGUCCaguaCGUGCUCa -5'
24479 5' -51.7 NC_005264.1 + 33395 0.66 0.987472
Target:  5'- uGGcGAugGCGACcgcGGUgAUGUuggGCGAGUa -3'
miRNA:   3'- -CC-UUugCGCUGu--CCAgUACG---UGCUCA- -5'
24479 5' -51.7 NC_005264.1 + 6590 0.67 0.985839
Target:  5'- aGggGC-CGACAGGUCAacggcgaGCGCGuGg -3'
miRNA:   3'- cCuuUGcGCUGUCCAGUa------CGUGCuCa -5'
24479 5' -51.7 NC_005264.1 + 125617 0.67 0.985839
Target:  5'- aGggGC-CGACAGGUCAacggcgaGCGCGuGg -3'
miRNA:   3'- cCuuUGcGCUGUCCAGUa------CGUGCuCa -5'
24479 5' -51.7 NC_005264.1 + 42390 0.67 0.984047
Target:  5'- aGGcGACGUGGCGGuGgaaAUGCGCGAa- -3'
miRNA:   3'- -CCuUUGCGCUGUC-Cag-UACGUGCUca -5'
24479 5' -51.7 NC_005264.1 + 82276 0.67 0.984047
Target:  5'- cGGAGCGCGAaGGGUCc-GC-CGAGa -3'
miRNA:   3'- cCUUUGCGCUgUCCAGuaCGuGCUCa -5'
24479 5' -51.7 NC_005264.1 + 143780 0.67 0.984047
Target:  5'- gGGAAGCGCGcuucccGCGGGUauuUAUGCACc--- -3'
miRNA:   3'- -CCUUUGCGC------UGUCCA---GUACGUGcuca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.