Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24480 | 3' | -57.1 | NC_005264.1 | + | 63261 | 0.67 | 0.818998 |
Target: 5'- ---aGCAUGCCGCUG-CGCuuguccaaGAGUAg -3' miRNA: 3'- uuagCGUACGGCGGCaGCGug------CUCAU- -5' |
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24480 | 3' | -57.1 | NC_005264.1 | + | 41300 | 0.67 | 0.81027 |
Target: 5'- aAGUCGCcccccgcGCUGaaGUCGCGCGAGg- -3' miRNA: 3'- -UUAGCGua-----CGGCggCAGCGUGCUCau -5' |
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24480 | 3' | -57.1 | NC_005264.1 | + | 131242 | 0.67 | 0.791421 |
Target: 5'- uAGUCGCgaucucgucaaaaGUGcCCGCCGUaacUGCGCGGGg- -3' miRNA: 3'- -UUAGCG-------------UAC-GGCGGCA---GCGUGCUCau -5' |
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24480 | 3' | -57.1 | NC_005264.1 | + | 123038 | 0.66 | 0.859914 |
Target: 5'- --aUGCGUGCCGCgCaUCGCcaACGAGa- -3' miRNA: 3'- uuaGCGUACGGCG-GcAGCG--UGCUCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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