miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24481 5' -54.5 NC_005264.1 + 111033 0.66 0.950776
Target:  5'- -gGUUCgAAGCGGUGGcucGCGCGGAc-- -3'
miRNA:   3'- cgCGAGgUUCGUCAUC---CGCGUCUuga -5'
24481 5' -54.5 NC_005264.1 + 6899 0.66 0.950776
Target:  5'- cGCGCagUCCcAGCGcgcggcuuuccGUGGGCGCGauugucuuGAGCUa -3'
miRNA:   3'- -CGCG--AGGuUCGU-----------CAUCCGCGU--------CUUGA- -5'
24481 5' -54.5 NC_005264.1 + 154667 0.66 0.948218
Target:  5'- uUGCUCUAuucccuagaugacacGGCAGc-GGCGCAGAuaccGCUg -3'
miRNA:   3'- cGCGAGGU---------------UCGUCauCCGCGUCU----UGA- -5'
24481 5' -54.5 NC_005264.1 + 45949 0.66 0.946464
Target:  5'- aGCGCUCUAGGUAaaacaGCGCGcGAGCa -3'
miRNA:   3'- -CGCGAGGUUCGUcauc-CGCGU-CUUGa -5'
24481 5' -54.5 NC_005264.1 + 37565 0.66 0.946464
Target:  5'- aGCGCgCCGccGCGGaGGGCGaAGAACa -3'
miRNA:   3'- -CGCGaGGUu-CGUCaUCCGCgUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 93577 0.66 0.946464
Target:  5'- cGCGCcCCAuggcAGCGGaugAGGCGCGcGAGu- -3'
miRNA:   3'- -CGCGaGGU----UCGUCa--UCCGCGU-CUUga -5'
24481 5' -54.5 NC_005264.1 + 110585 0.66 0.946464
Target:  5'- cCGUggCCGGGUgAGUAGGCgggggccccgaGCAGAACUu -3'
miRNA:   3'- cGCGa-GGUUCG-UCAUCCG-----------CGUCUUGA- -5'
24481 5' -54.5 NC_005264.1 + 96844 0.66 0.94191
Target:  5'- gGCGCUCUAcgacgucgacuGCAGagacacUAGGCGC-GAGCg -3'
miRNA:   3'- -CGCGAGGUu----------CGUC------AUCCGCGuCUUGa -5'
24481 5' -54.5 NC_005264.1 + 54249 0.66 0.94191
Target:  5'- cGCGCgCCAAcGUgucgAGUGGGaGCGGGGCg -3'
miRNA:   3'- -CGCGaGGUU-CG----UCAUCCgCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 136886 0.66 0.94191
Target:  5'- cGCGCUCaa---AGUGGGCGCGuacguGAGCc -3'
miRNA:   3'- -CGCGAGguucgUCAUCCGCGU-----CUUGa -5'
24481 5' -54.5 NC_005264.1 + 21255 0.66 0.94191
Target:  5'- gGCGCa-CGAGCuGaccaUAGGCGgCAGAACg -3'
miRNA:   3'- -CGCGagGUUCGuC----AUCCGC-GUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 89948 0.66 0.937112
Target:  5'- cCGC-CCAucGGCGGccgcUGGcGCGUAGAACUg -3'
miRNA:   3'- cGCGaGGU--UCGUC----AUC-CGCGUCUUGA- -5'
24481 5' -54.5 NC_005264.1 + 93121 0.66 0.937112
Target:  5'- cGCGCUCCc-GCGGUucacgauGGCGCcaauGAugUu -3'
miRNA:   3'- -CGCGAGGuuCGUCAu------CCGCGu---CUugA- -5'
24481 5' -54.5 NC_005264.1 + 84894 0.66 0.936619
Target:  5'- aGCGggCCGcgcaggacgggagGGCGGgaagagccAGGCGCGGGACa -3'
miRNA:   3'- -CGCgaGGU-------------UCGUCa-------UCCGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 47228 0.66 0.932069
Target:  5'- gGCuGgUCgGAGCucuuGGCGCAGAGCa -3'
miRNA:   3'- -CG-CgAGgUUCGucauCCGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 63271 0.66 0.926779
Target:  5'- uGCGCuugUCCAAG-AGUAGGcCGCAaGAAa- -3'
miRNA:   3'- -CGCG---AGGUUCgUCAUCC-GCGU-CUUga -5'
24481 5' -54.5 NC_005264.1 + 120705 0.67 0.921241
Target:  5'- cGCGCcgacaaagCC-GGCGGUcGGGCGgAGGACg -3'
miRNA:   3'- -CGCGa-------GGuUCGUCA-UCCGCgUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 14861 0.67 0.921241
Target:  5'- -aGCUCaCGAGCGaUAGGUGCGGuAAUa -3'
miRNA:   3'- cgCGAG-GUUCGUcAUCCGCGUC-UUGa -5'
24481 5' -54.5 NC_005264.1 + 25053 0.67 0.921241
Target:  5'- uGCGCUgCAAcCAGauGGUGUAGAACa -3'
miRNA:   3'- -CGCGAgGUUcGUCauCCGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 109598 0.67 0.9178
Target:  5'- cGCGC-CCGcggGGCAcggaaagcaaauggcGUGGGCGgGGGGCg -3'
miRNA:   3'- -CGCGaGGU---UCGU---------------CAUCCGCgUCUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.