Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24481 | 5' | -54.5 | NC_005264.1 | + | 48962 | 1.09 | 0.003689 |
Target: 5'- uGCGCUCCAAGCAGUAGGCGCAGAACUc -3' miRNA: 3'- -CGCGAGGUUCGUCAUCCGCGUCUUGA- -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 121641 | 0.78 | 0.372296 |
Target: 5'- gGCGCgagCCGAGCAGgcGGgGCGGAGuCUu -3' miRNA: 3'- -CGCGa--GGUUCGUCauCCgCGUCUU-GA- -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 2614 | 0.78 | 0.372296 |
Target: 5'- gGCGCgagCCGAGCAGgcGGgGCGGAGuCUu -3' miRNA: 3'- -CGCGa--GGUUCGUCauCCgCGUCUU-GA- -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 61863 | 0.77 | 0.415164 |
Target: 5'- gGCGCUCCAGGCA-UGGGagGCAGAAg- -3' miRNA: 3'- -CGCGAGGUUCGUcAUCCg-CGUCUUga -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 64052 | 0.76 | 0.433139 |
Target: 5'- gGUGCUUUAuAGUAGUAGGCGCAGGuCUc -3' miRNA: 3'- -CGCGAGGU-UCGUCAUCCGCGUCUuGA- -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 74252 | 0.75 | 0.479968 |
Target: 5'- cGCGCUCCAgacacGGCGGUAGaG-GCGGGGCc -3' miRNA: 3'- -CGCGAGGU-----UCGUCAUC-CgCGUCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 21508 | 0.74 | 0.539201 |
Target: 5'- uGgGCaccgCCGucGCAGUGGGCGCAGGugUa -3' miRNA: 3'- -CgCGa---GGUu-CGUCAUCCGCGUCUugA- -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 87628 | 0.73 | 0.600717 |
Target: 5'- cGCGCagggCCGAuGCAGccgcgugGGGCGCGGGACc -3' miRNA: 3'- -CGCGa---GGUU-CGUCa------UCCGCGUCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 82357 | 0.71 | 0.721457 |
Target: 5'- cGUGUgCCAGGCaggcgcgucgauccGGUgccGGGCGCAGGGCUa -3' miRNA: 3'- -CGCGaGGUUCG--------------UCA---UCCGCGUCUUGA- -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 40376 | 0.71 | 0.734477 |
Target: 5'- gGCGCUUugCGAGCAGcgcGGGCGCGGccCUa -3' miRNA: 3'- -CGCGAG--GUUCGUCa--UCCGCGUCuuGA- -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 11503 | 0.71 | 0.704233 |
Target: 5'- cGCGCggcccuugcCCAuguGCAGUuuuuGGCGCAGGAUa -3' miRNA: 3'- -CGCGa--------GGUu--CGUCAu---CCGCGUCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 159403 | 0.71 | 0.734477 |
Target: 5'- gGCGCUUugCGAGCAGcgcGGGCGCGGccCUa -3' miRNA: 3'- -CGCGAG--GUUCGUCa--UCCGCGUCuuGA- -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 102744 | 0.7 | 0.792224 |
Target: 5'- gGCGUugugggCCGccGGCAGUAGGCuaGGGGCg -3' miRNA: 3'- -CGCGa-----GGU--UCGUCAUCCGcgUCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 146924 | 0.7 | 0.782918 |
Target: 5'- gGCuaUCgGGGCAGUAguucguGGCGCAGAGgCUg -3' miRNA: 3'- -CGcgAGgUUCGUCAU------CCGCGUCUU-GA- -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 59901 | 0.69 | 0.844622 |
Target: 5'- cGCGggCCAGuGCccuGU-GGCGCAGAACg -3' miRNA: 3'- -CGCgaGGUU-CGu--CAuCCGCGUCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 80189 | 0.69 | 0.810381 |
Target: 5'- cGCGgUCUugaAAGgAG-AGGCGCGGGACg -3' miRNA: 3'- -CGCgAGG---UUCgUCaUCCGCGUCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 159817 | 0.69 | 0.819213 |
Target: 5'- gGCGCUgCAAacuGCGGgGGGCGCuGGAUg -3' miRNA: 3'- -CGCGAgGUU---CGUCaUCCGCGuCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 75093 | 0.69 | 0.827869 |
Target: 5'- gGCGCUgC-GGCAGgcgccGGCGCcGAGCUg -3' miRNA: 3'- -CGCGAgGuUCGUCau---CCGCGuCUUGA- -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 40791 | 0.69 | 0.819213 |
Target: 5'- gGCGCUgCAAacuGCGGgGGGCGCuGGAUg -3' miRNA: 3'- -CGCGAgGUU---CGUCaUCCGCGuCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 50591 | 0.68 | 0.889886 |
Target: 5'- gGCGCU--GAGCAGcccGGCGCuGGACg -3' miRNA: 3'- -CGCGAggUUCGUCau-CCGCGuCUUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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