miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24481 5' -54.5 NC_005264.1 + 48962 1.09 0.003689
Target:  5'- uGCGCUCCAAGCAGUAGGCGCAGAACUc -3'
miRNA:   3'- -CGCGAGGUUCGUCAUCCGCGUCUUGA- -5'
24481 5' -54.5 NC_005264.1 + 121641 0.78 0.372296
Target:  5'- gGCGCgagCCGAGCAGgcGGgGCGGAGuCUu -3'
miRNA:   3'- -CGCGa--GGUUCGUCauCCgCGUCUU-GA- -5'
24481 5' -54.5 NC_005264.1 + 2614 0.78 0.372296
Target:  5'- gGCGCgagCCGAGCAGgcGGgGCGGAGuCUu -3'
miRNA:   3'- -CGCGa--GGUUCGUCauCCgCGUCUU-GA- -5'
24481 5' -54.5 NC_005264.1 + 61863 0.77 0.415164
Target:  5'- gGCGCUCCAGGCA-UGGGagGCAGAAg- -3'
miRNA:   3'- -CGCGAGGUUCGUcAUCCg-CGUCUUga -5'
24481 5' -54.5 NC_005264.1 + 64052 0.76 0.433139
Target:  5'- gGUGCUUUAuAGUAGUAGGCGCAGGuCUc -3'
miRNA:   3'- -CGCGAGGU-UCGUCAUCCGCGUCUuGA- -5'
24481 5' -54.5 NC_005264.1 + 74252 0.75 0.479968
Target:  5'- cGCGCUCCAgacacGGCGGUAGaG-GCGGGGCc -3'
miRNA:   3'- -CGCGAGGU-----UCGUCAUC-CgCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 21508 0.74 0.539201
Target:  5'- uGgGCaccgCCGucGCAGUGGGCGCAGGugUa -3'
miRNA:   3'- -CgCGa---GGUu-CGUCAUCCGCGUCUugA- -5'
24481 5' -54.5 NC_005264.1 + 87628 0.73 0.600717
Target:  5'- cGCGCagggCCGAuGCAGccgcgugGGGCGCGGGACc -3'
miRNA:   3'- -CGCGa---GGUU-CGUCa------UCCGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 11503 0.71 0.704233
Target:  5'- cGCGCggcccuugcCCAuguGCAGUuuuuGGCGCAGGAUa -3'
miRNA:   3'- -CGCGa--------GGUu--CGUCAu---CCGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 82357 0.71 0.721457
Target:  5'- cGUGUgCCAGGCaggcgcgucgauccGGUgccGGGCGCAGGGCUa -3'
miRNA:   3'- -CGCGaGGUUCG--------------UCA---UCCGCGUCUUGA- -5'
24481 5' -54.5 NC_005264.1 + 40376 0.71 0.734477
Target:  5'- gGCGCUUugCGAGCAGcgcGGGCGCGGccCUa -3'
miRNA:   3'- -CGCGAG--GUUCGUCa--UCCGCGUCuuGA- -5'
24481 5' -54.5 NC_005264.1 + 159403 0.71 0.734477
Target:  5'- gGCGCUUugCGAGCAGcgcGGGCGCGGccCUa -3'
miRNA:   3'- -CGCGAG--GUUCGUCa--UCCGCGUCuuGA- -5'
24481 5' -54.5 NC_005264.1 + 146924 0.7 0.782918
Target:  5'- gGCuaUCgGGGCAGUAguucguGGCGCAGAGgCUg -3'
miRNA:   3'- -CGcgAGgUUCGUCAU------CCGCGUCUU-GA- -5'
24481 5' -54.5 NC_005264.1 + 102744 0.7 0.792224
Target:  5'- gGCGUugugggCCGccGGCAGUAGGCuaGGGGCg -3'
miRNA:   3'- -CGCGa-----GGU--UCGUCAUCCGcgUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 80189 0.69 0.810381
Target:  5'- cGCGgUCUugaAAGgAG-AGGCGCGGGACg -3'
miRNA:   3'- -CGCgAGG---UUCgUCaUCCGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 159817 0.69 0.819213
Target:  5'- gGCGCUgCAAacuGCGGgGGGCGCuGGAUg -3'
miRNA:   3'- -CGCGAgGUU---CGUCaUCCGCGuCUUGa -5'
24481 5' -54.5 NC_005264.1 + 40791 0.69 0.819213
Target:  5'- gGCGCUgCAAacuGCGGgGGGCGCuGGAUg -3'
miRNA:   3'- -CGCGAgGUU---CGUCaUCCGCGuCUUGa -5'
24481 5' -54.5 NC_005264.1 + 75093 0.69 0.827869
Target:  5'- gGCGCUgC-GGCAGgcgccGGCGCcGAGCUg -3'
miRNA:   3'- -CGCGAgGuUCGUCau---CCGCGuCUUGA- -5'
24481 5' -54.5 NC_005264.1 + 59901 0.69 0.844622
Target:  5'- cGCGggCCAGuGCccuGU-GGCGCAGAACg -3'
miRNA:   3'- -CGCgaGGUU-CGu--CAuCCGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 84933 0.68 0.852703
Target:  5'- cGCGCUCUguuGUAGUGuGGCGCcGggUg -3'
miRNA:   3'- -CGCGAGGuu-CGUCAU-CCGCGuCuuGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.