miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24481 5' -54.5 NC_005264.1 + 109598 0.67 0.9178
Target:  5'- cGCGC-CCGcggGGCAcggaaagcaaauggcGUGGGCGgGGGGCg -3'
miRNA:   3'- -CGCGaGGU---UCGU---------------CAUCCGCgUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 74647 0.67 0.915457
Target:  5'- aGCGCgaacCCAGGguGcAGGCcGCucuuGAGCUg -3'
miRNA:   3'- -CGCGa---GGUUCguCaUCCG-CGu---CUUGA- -5'
24481 5' -54.5 NC_005264.1 + 61370 0.67 0.915457
Target:  5'- aUGCUUgGGGCGGUGauuauGGUGCuGAACUu -3'
miRNA:   3'- cGCGAGgUUCGUCAU-----CCGCGuCUUGA- -5'
24481 5' -54.5 NC_005264.1 + 63819 0.67 0.915457
Target:  5'- uGCGCUagaUCGAGUAgGUAGuCGUAGAACg -3'
miRNA:   3'- -CGCGA---GGUUCGU-CAUCcGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 88083 0.67 0.909427
Target:  5'- uUGCgCCAAGCAGUGcGCGUcGGGCa -3'
miRNA:   3'- cGCGaGGUUCGUCAUcCGCGuCUUGa -5'
24481 5' -54.5 NC_005264.1 + 798 0.67 0.903154
Target:  5'- aGCGCUCCAguacGGCug-GGuGCGCGGccGGCUu -3'
miRNA:   3'- -CGCGAGGU----UCGucaUC-CGCGUC--UUGA- -5'
24481 5' -54.5 NC_005264.1 + 120127 0.67 0.903154
Target:  5'- gGCGCagCGAGCAGgAGGa-CGGAGCg -3'
miRNA:   3'- -CGCGagGUUCGUCaUCCgcGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 78597 0.67 0.896639
Target:  5'- aGCGCgugUCCAcGCGGUAGGCaagcucGCGGcGCc -3'
miRNA:   3'- -CGCG---AGGUuCGUCAUCCG------CGUCuUGa -5'
24481 5' -54.5 NC_005264.1 + 37377 0.67 0.896639
Target:  5'- aGC-CUCCGAGCA--GGGCGCGGc--- -3'
miRNA:   3'- -CGcGAGGUUCGUcaUCCGCGUCuuga -5'
24481 5' -54.5 NC_005264.1 + 129588 0.67 0.896639
Target:  5'- cGCGCUCugCAGGCGcUGcGGCGCGGcGGCg -3'
miRNA:   3'- -CGCGAG--GUUCGUcAU-CCGCGUC-UUGa -5'
24481 5' -54.5 NC_005264.1 + 133125 0.67 0.896639
Target:  5'- uGUGUUCUGAGCAccAGGCGCAaAACc -3'
miRNA:   3'- -CGCGAGGUUCGUcaUCCGCGUcUUGa -5'
24481 5' -54.5 NC_005264.1 + 114663 0.67 0.896639
Target:  5'- aGCGuCUCCAugaAGCGG-GGGUGCAGccACg -3'
miRNA:   3'- -CGC-GAGGU---UCGUCaUCCGCGUCu-UGa -5'
24481 5' -54.5 NC_005264.1 + 50591 0.68 0.889886
Target:  5'- gGCGCU--GAGCAGcccGGCGCuGGACg -3'
miRNA:   3'- -CGCGAggUUCGUCau-CCGCGuCUUGa -5'
24481 5' -54.5 NC_005264.1 + 93689 0.68 0.882899
Target:  5'- cGCGCUUaccguGGCAGUAG-CGCGGGccACa -3'
miRNA:   3'- -CGCGAGgu---UCGUCAUCcGCGUCU--UGa -5'
24481 5' -54.5 NC_005264.1 + 91322 0.68 0.882899
Target:  5'- -aGCUCCAAGUcg-AGGCGCAccGCg -3'
miRNA:   3'- cgCGAGGUUCGucaUCCGCGUcuUGa -5'
24481 5' -54.5 NC_005264.1 + 113632 0.68 0.882899
Target:  5'- cGCGUUuCCAGGUAGcgcGGGCGU-GAGCg -3'
miRNA:   3'- -CGCGA-GGUUCGUCa--UCCGCGuCUUGa -5'
24481 5' -54.5 NC_005264.1 + 16550 0.68 0.882899
Target:  5'- cGCGUauUUCAGcGCGGUGGGCGgcgcCGGGGCg -3'
miRNA:   3'- -CGCG--AGGUU-CGUCAUCCGC----GUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 25644 0.68 0.880758
Target:  5'- cGCGCUCCGcguuuuccucaaucGGCAcGUcuggGGGCaGCAGAAg- -3'
miRNA:   3'- -CGCGAGGU--------------UCGU-CA----UCCG-CGUCUUga -5'
24481 5' -54.5 NC_005264.1 + 52181 0.68 0.878596
Target:  5'- gGCGCUCCugauaaaugugcugaGGGCcGUGGGgCGCGGuGGCg -3'
miRNA:   3'- -CGCGAGG---------------UUCGuCAUCC-GCGUC-UUGa -5'
24481 5' -54.5 NC_005264.1 + 50984 0.68 0.868239
Target:  5'- aCGCUCCGcuacccGGCAGc-GGUGCGGAAg- -3'
miRNA:   3'- cGCGAGGU------UCGUCauCCGCGUCUUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.