miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24481 5' -54.5 NC_005264.1 + 798 0.67 0.903154
Target:  5'- aGCGCUCCAguacGGCug-GGuGCGCGGccGGCUu -3'
miRNA:   3'- -CGCGAGGU----UCGucaUC-CGCGUC--UUGA- -5'
24481 5' -54.5 NC_005264.1 + 2614 0.78 0.372296
Target:  5'- gGCGCgagCCGAGCAGgcGGgGCGGAGuCUu -3'
miRNA:   3'- -CGCGa--GGUUCGUCauCCgCGUCUU-GA- -5'
24481 5' -54.5 NC_005264.1 + 6899 0.66 0.950776
Target:  5'- cGCGCagUCCcAGCGcgcggcuuuccGUGGGCGCGauugucuuGAGCUa -3'
miRNA:   3'- -CGCG--AGGuUCGU-----------CAUCCGCGU--------CUUGA- -5'
24481 5' -54.5 NC_005264.1 + 11503 0.71 0.704233
Target:  5'- cGCGCggcccuugcCCAuguGCAGUuuuuGGCGCAGGAUa -3'
miRNA:   3'- -CGCGa--------GGUu--CGUCAu---CCGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 14861 0.67 0.921241
Target:  5'- -aGCUCaCGAGCGaUAGGUGCGGuAAUa -3'
miRNA:   3'- cgCGAG-GUUCGUcAUCCGCGUC-UUGa -5'
24481 5' -54.5 NC_005264.1 + 16550 0.68 0.882899
Target:  5'- cGCGUauUUCAGcGCGGUGGGCGgcgcCGGGGCg -3'
miRNA:   3'- -CGCG--AGGUU-CGUCAUCCGC----GUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 21255 0.66 0.94191
Target:  5'- gGCGCa-CGAGCuGaccaUAGGCGgCAGAACg -3'
miRNA:   3'- -CGCGagGUUCGuC----AUCCGC-GUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 21508 0.74 0.539201
Target:  5'- uGgGCaccgCCGucGCAGUGGGCGCAGGugUa -3'
miRNA:   3'- -CgCGa---GGUu-CGUCAUCCGCGUCUugA- -5'
24481 5' -54.5 NC_005264.1 + 25053 0.67 0.921241
Target:  5'- uGCGCUgCAAcCAGauGGUGUAGAACa -3'
miRNA:   3'- -CGCGAgGUUcGUCauCCGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 25644 0.68 0.880758
Target:  5'- cGCGCUCCGcguuuuccucaaucGGCAcGUcuggGGGCaGCAGAAg- -3'
miRNA:   3'- -CGCGAGGU--------------UCGU-CA----UCCG-CGUCUUga -5'
24481 5' -54.5 NC_005264.1 + 31391 0.68 0.860578
Target:  5'- cGCGcCUCCAAGCAcGUagcGGGcCGCcucGGGGCg -3'
miRNA:   3'- -CGC-GAGGUUCGU-CA---UCC-GCG---UCUUGa -5'
24481 5' -54.5 NC_005264.1 + 31513 0.68 0.852703
Target:  5'- gGCgGCUCCAGGCuc-GGGCGgGGAGg- -3'
miRNA:   3'- -CG-CGAGGUUCGucaUCCGCgUCUUga -5'
24481 5' -54.5 NC_005264.1 + 37377 0.67 0.896639
Target:  5'- aGC-CUCCGAGCA--GGGCGCGGc--- -3'
miRNA:   3'- -CGcGAGGUUCGUcaUCCGCGUCuuga -5'
24481 5' -54.5 NC_005264.1 + 37565 0.66 0.946464
Target:  5'- aGCGCgCCGccGCGGaGGGCGaAGAACa -3'
miRNA:   3'- -CGCGaGGUu-CGUCaUCCGCgUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 40376 0.71 0.734477
Target:  5'- gGCGCUUugCGAGCAGcgcGGGCGCGGccCUa -3'
miRNA:   3'- -CGCGAG--GUUCGUCa--UCCGCGUCuuGA- -5'
24481 5' -54.5 NC_005264.1 + 40791 0.69 0.819213
Target:  5'- gGCGCUgCAAacuGCGGgGGGCGCuGGAUg -3'
miRNA:   3'- -CGCGAgGUU---CGUCaUCCGCGuCUUGa -5'
24481 5' -54.5 NC_005264.1 + 45949 0.66 0.946464
Target:  5'- aGCGCUCUAGGUAaaacaGCGCGcGAGCa -3'
miRNA:   3'- -CGCGAGGUUCGUcauc-CGCGU-CUUGa -5'
24481 5' -54.5 NC_005264.1 + 47228 0.66 0.932069
Target:  5'- gGCuGgUCgGAGCucuuGGCGCAGAGCa -3'
miRNA:   3'- -CG-CgAGgUUCGucauCCGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 48962 1.09 0.003689
Target:  5'- uGCGCUCCAAGCAGUAGGCGCAGAACUc -3'
miRNA:   3'- -CGCGAGGUUCGUCAUCCGCGUCUUGA- -5'
24481 5' -54.5 NC_005264.1 + 50591 0.68 0.889886
Target:  5'- gGCGCU--GAGCAGcccGGCGCuGGACg -3'
miRNA:   3'- -CGCGAggUUCGUCau-CCGCGuCUUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.