miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24481 5' -54.5 NC_005264.1 + 50984 0.68 0.868239
Target:  5'- aCGCUCCGcuacccGGCAGc-GGUGCGGAAg- -3'
miRNA:   3'- cGCGAGGU------UCGUCauCCGCGUCUUga -5'
24481 5' -54.5 NC_005264.1 + 52181 0.68 0.878596
Target:  5'- gGCGCUCCugauaaaugugcugaGGGCcGUGGGgCGCGGuGGCg -3'
miRNA:   3'- -CGCGAGG---------------UUCGuCAUCC-GCGUC-UUGa -5'
24481 5' -54.5 NC_005264.1 + 54249 0.66 0.94191
Target:  5'- cGCGCgCCAAcGUgucgAGUGGGaGCGGGGCg -3'
miRNA:   3'- -CGCGaGGUU-CG----UCAUCCgCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 59901 0.69 0.844622
Target:  5'- cGCGggCCAGuGCccuGU-GGCGCAGAACg -3'
miRNA:   3'- -CGCgaGGUU-CGu--CAuCCGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 61370 0.67 0.915457
Target:  5'- aUGCUUgGGGCGGUGauuauGGUGCuGAACUu -3'
miRNA:   3'- cGCGAGgUUCGUCAU-----CCGCGuCUUGA- -5'
24481 5' -54.5 NC_005264.1 + 61863 0.77 0.415164
Target:  5'- gGCGCUCCAGGCA-UGGGagGCAGAAg- -3'
miRNA:   3'- -CGCGAGGUUCGUcAUCCg-CGUCUUga -5'
24481 5' -54.5 NC_005264.1 + 63271 0.66 0.926779
Target:  5'- uGCGCuugUCCAAG-AGUAGGcCGCAaGAAa- -3'
miRNA:   3'- -CGCG---AGGUUCgUCAUCC-GCGU-CUUga -5'
24481 5' -54.5 NC_005264.1 + 63819 0.67 0.915457
Target:  5'- uGCGCUagaUCGAGUAgGUAGuCGUAGAACg -3'
miRNA:   3'- -CGCGA---GGUUCGU-CAUCcGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 64052 0.76 0.433139
Target:  5'- gGUGCUUUAuAGUAGUAGGCGCAGGuCUc -3'
miRNA:   3'- -CGCGAGGU-UCGUCAUCCGCGUCUuGA- -5'
24481 5' -54.5 NC_005264.1 + 74252 0.75 0.479968
Target:  5'- cGCGCUCCAgacacGGCGGUAGaG-GCGGGGCc -3'
miRNA:   3'- -CGCGAGGU-----UCGUCAUC-CgCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 74647 0.67 0.915457
Target:  5'- aGCGCgaacCCAGGguGcAGGCcGCucuuGAGCUg -3'
miRNA:   3'- -CGCGa---GGUUCguCaUCCG-CGu---CUUGA- -5'
24481 5' -54.5 NC_005264.1 + 75093 0.69 0.827869
Target:  5'- gGCGCUgC-GGCAGgcgccGGCGCcGAGCUg -3'
miRNA:   3'- -CGCGAgGuUCGUCau---CCGCGuCUUGA- -5'
24481 5' -54.5 NC_005264.1 + 78597 0.67 0.896639
Target:  5'- aGCGCgugUCCAcGCGGUAGGCaagcucGCGGcGCc -3'
miRNA:   3'- -CGCG---AGGUuCGUCAUCCG------CGUCuUGa -5'
24481 5' -54.5 NC_005264.1 + 80189 0.69 0.810381
Target:  5'- cGCGgUCUugaAAGgAG-AGGCGCGGGACg -3'
miRNA:   3'- -CGCgAGG---UUCgUCaUCCGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 82357 0.71 0.721457
Target:  5'- cGUGUgCCAGGCaggcgcgucgauccGGUgccGGGCGCAGGGCUa -3'
miRNA:   3'- -CGCGaGGUUCG--------------UCA---UCCGCGUCUUGA- -5'
24481 5' -54.5 NC_005264.1 + 84894 0.66 0.936619
Target:  5'- aGCGggCCGcgcaggacgggagGGCGGgaagagccAGGCGCGGGACa -3'
miRNA:   3'- -CGCgaGGU-------------UCGUCa-------UCCGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 84933 0.68 0.852703
Target:  5'- cGCGCUCUguuGUAGUGuGGCGCcGggUg -3'
miRNA:   3'- -CGCGAGGuu-CGUCAU-CCGCGuCuuGa -5'
24481 5' -54.5 NC_005264.1 + 87628 0.73 0.600717
Target:  5'- cGCGCagggCCGAuGCAGccgcgugGGGCGCGGGACc -3'
miRNA:   3'- -CGCGa---GGUU-CGUCa------UCCGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 88083 0.67 0.909427
Target:  5'- uUGCgCCAAGCAGUGcGCGUcGGGCa -3'
miRNA:   3'- cGCGaGGUUCGUCAUcCGCGuCUUGa -5'
24481 5' -54.5 NC_005264.1 + 89948 0.66 0.937112
Target:  5'- cCGC-CCAucGGCGGccgcUGGcGCGUAGAACUg -3'
miRNA:   3'- cGCGaGGU--UCGUC----AUC-CGCGUCUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.