miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24481 5' -54.5 NC_005264.1 + 159817 0.69 0.819213
Target:  5'- gGCGCUgCAAacuGCGGgGGGCGCuGGAUg -3'
miRNA:   3'- -CGCGAgGUU---CGUCaUCCGCGuCUUGa -5'
24481 5' -54.5 NC_005264.1 + 159403 0.71 0.734477
Target:  5'- gGCGCUUugCGAGCAGcgcGGGCGCGGccCUa -3'
miRNA:   3'- -CGCGAG--GUUCGUCa--UCCGCGUCuuGA- -5'
24481 5' -54.5 NC_005264.1 + 154667 0.66 0.948218
Target:  5'- uUGCUCUAuucccuagaugacacGGCAGc-GGCGCAGAuaccGCUg -3'
miRNA:   3'- cGCGAGGU---------------UCGUCauCCGCGUCU----UGA- -5'
24481 5' -54.5 NC_005264.1 + 150540 0.68 0.852703
Target:  5'- gGCgGCUCCAGGCuc-GGGCGgGGAGg- -3'
miRNA:   3'- -CG-CGAGGUUCGucaUCCGCgUCUUga -5'
24481 5' -54.5 NC_005264.1 + 150418 0.68 0.860578
Target:  5'- cGCGcCUCCAAGCAcGUagcGGGcCGCcucGGGGCg -3'
miRNA:   3'- -CGC-GAGGUUCGU-CA---UCC-GCG---UCUUGa -5'
24481 5' -54.5 NC_005264.1 + 146924 0.7 0.782918
Target:  5'- gGCuaUCgGGGCAGUAguucguGGCGCAGAGgCUg -3'
miRNA:   3'- -CGcgAGgUUCGUCAU------CCGCGUCUU-GA- -5'
24481 5' -54.5 NC_005264.1 + 136886 0.66 0.94191
Target:  5'- cGCGCUCaa---AGUGGGCGCGuacguGAGCc -3'
miRNA:   3'- -CGCGAGguucgUCAUCCGCGU-----CUUGa -5'
24481 5' -54.5 NC_005264.1 + 133125 0.67 0.896639
Target:  5'- uGUGUUCUGAGCAccAGGCGCAaAACc -3'
miRNA:   3'- -CGCGAGGUUCGUcaUCCGCGUcUUGa -5'
24481 5' -54.5 NC_005264.1 + 129588 0.67 0.896639
Target:  5'- cGCGCUCugCAGGCGcUGcGGCGCGGcGGCg -3'
miRNA:   3'- -CGCGAG--GUUCGUcAU-CCGCGUC-UUGa -5'
24481 5' -54.5 NC_005264.1 + 129471 0.67 0.9178
Target:  5'- aGCGCUaCCAAacccgacucgagauuGCGGc-GGCGCAGggUUu -3'
miRNA:   3'- -CGCGA-GGUU---------------CGUCauCCGCGUCuuGA- -5'
24481 5' -54.5 NC_005264.1 + 121641 0.78 0.372296
Target:  5'- gGCGCgagCCGAGCAGgcGGgGCGGAGuCUu -3'
miRNA:   3'- -CGCGa--GGUUCGUCauCCgCGUCUU-GA- -5'
24481 5' -54.5 NC_005264.1 + 120705 0.67 0.921241
Target:  5'- cGCGCcgacaaagCC-GGCGGUcGGGCGgAGGACg -3'
miRNA:   3'- -CGCGa-------GGuUCGUCA-UCCGCgUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 120127 0.67 0.903154
Target:  5'- gGCGCagCGAGCAGgAGGa-CGGAGCg -3'
miRNA:   3'- -CGCGagGUUCGUCaUCCgcGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 114663 0.67 0.896639
Target:  5'- aGCGuCUCCAugaAGCGG-GGGUGCAGccACg -3'
miRNA:   3'- -CGC-GAGGU---UCGUCaUCCGCGUCu-UGa -5'
24481 5' -54.5 NC_005264.1 + 113632 0.68 0.882899
Target:  5'- cGCGUUuCCAGGUAGcgcGGGCGU-GAGCg -3'
miRNA:   3'- -CGCGA-GGUUCGUCa--UCCGCGuCUUGa -5'
24481 5' -54.5 NC_005264.1 + 111033 0.66 0.950776
Target:  5'- -gGUUCgAAGCGGUGGcucGCGCGGAc-- -3'
miRNA:   3'- cgCGAGgUUCGUCAUC---CGCGUCUuga -5'
24481 5' -54.5 NC_005264.1 + 110585 0.66 0.946464
Target:  5'- cCGUggCCGGGUgAGUAGGCgggggccccgaGCAGAACUu -3'
miRNA:   3'- cGCGa-GGUUCG-UCAUCCG-----------CGUCUUGA- -5'
24481 5' -54.5 NC_005264.1 + 109598 0.67 0.9178
Target:  5'- cGCGC-CCGcggGGCAcggaaagcaaauggcGUGGGCGgGGGGCg -3'
miRNA:   3'- -CGCGaGGU---UCGU---------------CAUCCGCgUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 102744 0.7 0.792224
Target:  5'- gGCGUugugggCCGccGGCAGUAGGCuaGGGGCg -3'
miRNA:   3'- -CGCGa-----GGU--UCGUCAUCCGcgUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 96844 0.66 0.94191
Target:  5'- gGCGCUCUAcgacgucgacuGCAGagacacUAGGCGC-GAGCg -3'
miRNA:   3'- -CGCGAGGUu----------CGUC------AUCCGCGuCUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.