miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24481 5' -54.5 NC_005264.1 + 89948 0.66 0.937112
Target:  5'- cCGC-CCAucGGCGGccgcUGGcGCGUAGAACUg -3'
miRNA:   3'- cGCGaGGU--UCGUC----AUC-CGCGUCUUGA- -5'
24481 5' -54.5 NC_005264.1 + 113632 0.68 0.882899
Target:  5'- cGCGUUuCCAGGUAGcgcGGGCGU-GAGCg -3'
miRNA:   3'- -CGCGA-GGUUCGUCa--UCCGCGuCUUGa -5'
24481 5' -54.5 NC_005264.1 + 50591 0.68 0.889886
Target:  5'- gGCGCU--GAGCAGcccGGCGCuGGACg -3'
miRNA:   3'- -CGCGAggUUCGUCau-CCGCGuCUUGa -5'
24481 5' -54.5 NC_005264.1 + 37377 0.67 0.896639
Target:  5'- aGC-CUCCGAGCA--GGGCGCGGc--- -3'
miRNA:   3'- -CGcGAGGUUCGUcaUCCGCGUCuuga -5'
24481 5' -54.5 NC_005264.1 + 78597 0.67 0.896639
Target:  5'- aGCGCgugUCCAcGCGGUAGGCaagcucGCGGcGCc -3'
miRNA:   3'- -CGCG---AGGUuCGUCAUCCG------CGUCuUGa -5'
24481 5' -54.5 NC_005264.1 + 798 0.67 0.903154
Target:  5'- aGCGCUCCAguacGGCug-GGuGCGCGGccGGCUu -3'
miRNA:   3'- -CGCGAGGU----UCGucaUC-CGCGUC--UUGA- -5'
24481 5' -54.5 NC_005264.1 + 88083 0.67 0.909427
Target:  5'- uUGCgCCAAGCAGUGcGCGUcGGGCa -3'
miRNA:   3'- cGCGaGGUUCGUCAUcCGCGuCUUGa -5'
24481 5' -54.5 NC_005264.1 + 47228 0.66 0.932069
Target:  5'- gGCuGgUCgGAGCucuuGGCGCAGAGCa -3'
miRNA:   3'- -CG-CgAGgUUCGucauCCGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 84894 0.66 0.936619
Target:  5'- aGCGggCCGcgcaggacgggagGGCGGgaagagccAGGCGCGGGACa -3'
miRNA:   3'- -CGCgaGGU-------------UCGUCa-------UCCGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 93689 0.68 0.882899
Target:  5'- cGCGCUUaccguGGCAGUAG-CGCGGGccACa -3'
miRNA:   3'- -CGCGAGgu---UCGUCAUCcGCGUCU--UGa -5'
24481 5' -54.5 NC_005264.1 + 16550 0.68 0.882899
Target:  5'- cGCGUauUUCAGcGCGGUGGGCGgcgcCGGGGCg -3'
miRNA:   3'- -CGCG--AGGUU-CGUCAUCCGC----GUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 52181 0.68 0.878596
Target:  5'- gGCGCUCCugauaaaugugcugaGGGCcGUGGGgCGCGGuGGCg -3'
miRNA:   3'- -CGCGAGG---------------UUCGuCAUCC-GCGUC-UUGa -5'
24481 5' -54.5 NC_005264.1 + 11503 0.71 0.704233
Target:  5'- cGCGCggcccuugcCCAuguGCAGUuuuuGGCGCAGGAUa -3'
miRNA:   3'- -CGCGa--------GGUu--CGUCAu---CCGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 159403 0.71 0.734477
Target:  5'- gGCGCUUugCGAGCAGcgcGGGCGCGGccCUa -3'
miRNA:   3'- -CGCGAG--GUUCGUCa--UCCGCGUCuuGA- -5'
24481 5' -54.5 NC_005264.1 + 159817 0.69 0.819213
Target:  5'- gGCGCUgCAAacuGCGGgGGGCGCuGGAUg -3'
miRNA:   3'- -CGCGAgGUU---CGUCaUCCGCGuCUUGa -5'
24481 5' -54.5 NC_005264.1 + 75093 0.69 0.827869
Target:  5'- gGCGCUgC-GGCAGgcgccGGCGCcGAGCUg -3'
miRNA:   3'- -CGCGAgGuUCGUCau---CCGCGuCUUGA- -5'
24481 5' -54.5 NC_005264.1 + 59901 0.69 0.844622
Target:  5'- cGCGggCCAGuGCccuGU-GGCGCAGAACg -3'
miRNA:   3'- -CGCgaGGUU-CGu--CAuCCGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 150540 0.68 0.852703
Target:  5'- gGCgGCUCCAGGCuc-GGGCGgGGAGg- -3'
miRNA:   3'- -CG-CGAGGUUCGucaUCCGCgUCUUga -5'
24481 5' -54.5 NC_005264.1 + 150418 0.68 0.860578
Target:  5'- cGCGcCUCCAAGCAcGUagcGGGcCGCcucGGGGCg -3'
miRNA:   3'- -CGC-GAGGUUCGU-CA---UCC-GCG---UCUUGa -5'
24481 5' -54.5 NC_005264.1 + 50984 0.68 0.868239
Target:  5'- aCGCUCCGcuacccGGCAGc-GGUGCGGAAg- -3'
miRNA:   3'- cGCGAGGU------UCGUCauCCGCGUCUUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.