Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24481 | 5' | -54.5 | NC_005264.1 | + | 75093 | 0.69 | 0.827869 |
Target: 5'- gGCGCUgC-GGCAGgcgccGGCGCcGAGCUg -3' miRNA: 3'- -CGCGAgGuUCGUCau---CCGCGuCUUGA- -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 59901 | 0.69 | 0.844622 |
Target: 5'- cGCGggCCAGuGCccuGU-GGCGCAGAACg -3' miRNA: 3'- -CGCgaGGUU-CGu--CAuCCGCGUCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 150540 | 0.68 | 0.852703 |
Target: 5'- gGCgGCUCCAGGCuc-GGGCGgGGAGg- -3' miRNA: 3'- -CG-CGAGGUUCGucaUCCGCgUCUUga -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 150418 | 0.68 | 0.860578 |
Target: 5'- cGCGcCUCCAAGCAcGUagcGGGcCGCcucGGGGCg -3' miRNA: 3'- -CGC-GAGGUUCGU-CA---UCC-GCG---UCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 50591 | 0.68 | 0.889886 |
Target: 5'- gGCGCU--GAGCAGcccGGCGCuGGACg -3' miRNA: 3'- -CGCGAggUUCGUCau-CCGCGuCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 113632 | 0.68 | 0.882899 |
Target: 5'- cGCGUUuCCAGGUAGcgcGGGCGU-GAGCg -3' miRNA: 3'- -CGCGA-GGUUCGUCa--UCCGCGuCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 93689 | 0.68 | 0.882899 |
Target: 5'- cGCGCUUaccguGGCAGUAG-CGCGGGccACa -3' miRNA: 3'- -CGCGAGgu---UCGUCAUCcGCGUCU--UGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 16550 | 0.68 | 0.882899 |
Target: 5'- cGCGUauUUCAGcGCGGUGGGCGgcgcCGGGGCg -3' miRNA: 3'- -CGCG--AGGUU-CGUCAUCCGC----GUCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 52181 | 0.68 | 0.878596 |
Target: 5'- gGCGCUCCugauaaaugugcugaGGGCcGUGGGgCGCGGuGGCg -3' miRNA: 3'- -CGCGAGG---------------UUCGuCAUCC-GCGUC-UUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 50984 | 0.68 | 0.868239 |
Target: 5'- aCGCUCCGcuacccGGCAGc-GGUGCGGAAg- -3' miRNA: 3'- cGCGAGGU------UCGUCauCCGCGUCUUga -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 61370 | 0.67 | 0.915457 |
Target: 5'- aUGCUUgGGGCGGUGauuauGGUGCuGAACUu -3' miRNA: 3'- cGCGAGgUUCGUCAU-----CCGCGuCUUGA- -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 129471 | 0.67 | 0.9178 |
Target: 5'- aGCGCUaCCAAacccgacucgagauuGCGGc-GGCGCAGggUUu -3' miRNA: 3'- -CGCGA-GGUU---------------CGUCauCCGCGUCuuGA- -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 109598 | 0.67 | 0.9178 |
Target: 5'- cGCGC-CCGcggGGCAcggaaagcaaauggcGUGGGCGgGGGGCg -3' miRNA: 3'- -CGCGaGGU---UCGU---------------CAUCCGCgUCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 14861 | 0.67 | 0.921241 |
Target: 5'- -aGCUCaCGAGCGaUAGGUGCGGuAAUa -3' miRNA: 3'- cgCGAG-GUUCGUcAUCCGCGUC-UUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 25053 | 0.67 | 0.921241 |
Target: 5'- uGCGCUgCAAcCAGauGGUGUAGAACa -3' miRNA: 3'- -CGCGAgGUUcGUCauCCGCGUCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 120705 | 0.67 | 0.921241 |
Target: 5'- cGCGCcgacaaagCC-GGCGGUcGGGCGgAGGACg -3' miRNA: 3'- -CGCGa-------GGuUCGUCA-UCCGCgUCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 63271 | 0.66 | 0.926779 |
Target: 5'- uGCGCuugUCCAAG-AGUAGGcCGCAaGAAa- -3' miRNA: 3'- -CGCG---AGGUUCgUCAUCC-GCGU-CUUga -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 93121 | 0.66 | 0.937112 |
Target: 5'- cGCGCUCCc-GCGGUucacgauGGCGCcaauGAugUu -3' miRNA: 3'- -CGCGAGGuuCGUCAu------CCGCGu---CUugA- -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 54249 | 0.66 | 0.94191 |
Target: 5'- cGCGCgCCAAcGUgucgAGUGGGaGCGGGGCg -3' miRNA: 3'- -CGCGaGGUU-CG----UCAUCCgCGUCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 48962 | 1.09 | 0.003689 |
Target: 5'- uGCGCUCCAAGCAGUAGGCGCAGAACUc -3' miRNA: 3'- -CGCGAGGUUCGUCAUCCGCGUCUUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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