Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24481 | 5' | -54.5 | NC_005264.1 | + | 87628 | 0.73 | 0.600717 |
Target: 5'- cGCGCagggCCGAuGCAGccgcgugGGGCGCGGGACc -3' miRNA: 3'- -CGCGa---GGUU-CGUCa------UCCGCGUCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 21508 | 0.74 | 0.539201 |
Target: 5'- uGgGCaccgCCGucGCAGUGGGCGCAGGugUa -3' miRNA: 3'- -CgCGa---GGUu-CGUCAUCCGCGUCUugA- -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 74252 | 0.75 | 0.479968 |
Target: 5'- cGCGCUCCAgacacGGCGGUAGaG-GCGGGGCc -3' miRNA: 3'- -CGCGAGGU-----UCGUCAUC-CgCGUCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 64052 | 0.76 | 0.433139 |
Target: 5'- gGUGCUUUAuAGUAGUAGGCGCAGGuCUc -3' miRNA: 3'- -CGCGAGGU-UCGUCAUCCGCGUCUuGA- -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 91322 | 0.68 | 0.882899 |
Target: 5'- -aGCUCCAAGUcg-AGGCGCAccGCg -3' miRNA: 3'- cgCGAGGUUCGucaUCCGCGUcuUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 114663 | 0.67 | 0.896639 |
Target: 5'- aGCGuCUCCAugaAGCGG-GGGUGCAGccACg -3' miRNA: 3'- -CGC-GAGGU---UCGUCaUCCGCGUCu-UGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 133125 | 0.67 | 0.896639 |
Target: 5'- uGUGUUCUGAGCAccAGGCGCAaAACc -3' miRNA: 3'- -CGCGAGGUUCGUcaUCCGCGUcUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 54249 | 0.66 | 0.94191 |
Target: 5'- cGCGCgCCAAcGUgucgAGUGGGaGCGGGGCg -3' miRNA: 3'- -CGCGaGGUU-CG----UCAUCCgCGUCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 93121 | 0.66 | 0.937112 |
Target: 5'- cGCGCUCCc-GCGGUucacgauGGCGCcaauGAugUu -3' miRNA: 3'- -CGCGAGGuuCGUCAu------CCGCGu---CUugA- -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 63271 | 0.66 | 0.926779 |
Target: 5'- uGCGCuugUCCAAG-AGUAGGcCGCAaGAAa- -3' miRNA: 3'- -CGCG---AGGUUCgUCAUCC-GCGU-CUUga -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 120705 | 0.67 | 0.921241 |
Target: 5'- cGCGCcgacaaagCC-GGCGGUcGGGCGgAGGACg -3' miRNA: 3'- -CGCGa-------GGuUCGUCA-UCCGCgUCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 25053 | 0.67 | 0.921241 |
Target: 5'- uGCGCUgCAAcCAGauGGUGUAGAACa -3' miRNA: 3'- -CGCGAgGUUcGUCauCCGCGUCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 14861 | 0.67 | 0.921241 |
Target: 5'- -aGCUCaCGAGCGaUAGGUGCGGuAAUa -3' miRNA: 3'- cgCGAG-GUUCGUcAUCCGCGUC-UUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 109598 | 0.67 | 0.9178 |
Target: 5'- cGCGC-CCGcggGGCAcggaaagcaaauggcGUGGGCGgGGGGCg -3' miRNA: 3'- -CGCGaGGU---UCGU---------------CAUCCGCgUCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 129471 | 0.67 | 0.9178 |
Target: 5'- aGCGCUaCCAAacccgacucgagauuGCGGc-GGCGCAGggUUu -3' miRNA: 3'- -CGCGA-GGUU---------------CGUCauCCGCGUCuuGA- -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 61370 | 0.67 | 0.915457 |
Target: 5'- aUGCUUgGGGCGGUGauuauGGUGCuGAACUu -3' miRNA: 3'- cGCGAGgUUCGUCAU-----CCGCGuCUUGA- -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 74647 | 0.67 | 0.915457 |
Target: 5'- aGCGCgaacCCAGGguGcAGGCcGCucuuGAGCUg -3' miRNA: 3'- -CGCGa---GGUUCguCaUCCG-CGu---CUUGA- -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 63819 | 0.67 | 0.915457 |
Target: 5'- uGCGCUagaUCGAGUAgGUAGuCGUAGAACg -3' miRNA: 3'- -CGCGA---GGUUCGU-CAUCcGCGUCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 120127 | 0.67 | 0.903154 |
Target: 5'- gGCGCagCGAGCAGgAGGa-CGGAGCg -3' miRNA: 3'- -CGCGagGUUCGUCaUCCgcGUCUUGa -5' |
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24481 | 5' | -54.5 | NC_005264.1 | + | 129588 | 0.67 | 0.896639 |
Target: 5'- cGCGCUCugCAGGCGcUGcGGCGCGGcGGCg -3' miRNA: 3'- -CGCGAG--GUUCGUcAU-CCGCGUC-UUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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