miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24481 5' -54.5 NC_005264.1 + 154667 0.66 0.948218
Target:  5'- uUGCUCUAuucccuagaugacacGGCAGc-GGCGCAGAuaccGCUg -3'
miRNA:   3'- cGCGAGGU---------------UCGUCauCCGCGUCU----UGA- -5'
24481 5' -54.5 NC_005264.1 + 25644 0.68 0.880758
Target:  5'- cGCGCUCCGcguuuuccucaaucGGCAcGUcuggGGGCaGCAGAAg- -3'
miRNA:   3'- -CGCGAGGU--------------UCGU-CA----UCCG-CGUCUUga -5'
24481 5' -54.5 NC_005264.1 + 84933 0.68 0.852703
Target:  5'- cGCGCUCUguuGUAGUGuGGCGCcGggUg -3'
miRNA:   3'- -CGCGAGGuu-CGUCAU-CCGCGuCuuGa -5'
24481 5' -54.5 NC_005264.1 + 48962 1.09 0.003689
Target:  5'- uGCGCUCCAAGCAGUAGGCGCAGAACUc -3'
miRNA:   3'- -CGCGAGGUUCGUCAUCCGCGUCUUGA- -5'
24481 5' -54.5 NC_005264.1 + 120705 0.67 0.921241
Target:  5'- cGCGCcgacaaagCC-GGCGGUcGGGCGgAGGACg -3'
miRNA:   3'- -CGCGa-------GGuUCGUCA-UCCGCgUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 25053 0.67 0.921241
Target:  5'- uGCGCUgCAAcCAGauGGUGUAGAACa -3'
miRNA:   3'- -CGCGAgGUUcGUCauCCGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 109598 0.67 0.9178
Target:  5'- cGCGC-CCGcggGGCAcggaaagcaaauggcGUGGGCGgGGGGCg -3'
miRNA:   3'- -CGCGaGGU---UCGU---------------CAUCCGCgUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 129471 0.67 0.9178
Target:  5'- aGCGCUaCCAAacccgacucgagauuGCGGc-GGCGCAGggUUu -3'
miRNA:   3'- -CGCGA-GGUU---------------CGUCauCCGCGUCuuGA- -5'
24481 5' -54.5 NC_005264.1 + 63819 0.67 0.915457
Target:  5'- uGCGCUagaUCGAGUAgGUAGuCGUAGAACg -3'
miRNA:   3'- -CGCGA---GGUUCGU-CAUCcGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 91322 0.68 0.882899
Target:  5'- -aGCUCCAAGUcg-AGGCGCAccGCg -3'
miRNA:   3'- cgCGAGGUUCGucaUCCGCGUcuUGa -5'
24481 5' -54.5 NC_005264.1 + 129588 0.67 0.896639
Target:  5'- cGCGCUCugCAGGCGcUGcGGCGCGGcGGCg -3'
miRNA:   3'- -CGCGAG--GUUCGUcAU-CCGCGUC-UUGa -5'
24481 5' -54.5 NC_005264.1 + 74647 0.67 0.915457
Target:  5'- aGCGCgaacCCAGGguGcAGGCcGCucuuGAGCUg -3'
miRNA:   3'- -CGCGa---GGUUCguCaUCCG-CGu---CUUGA- -5'
24481 5' -54.5 NC_005264.1 + 54249 0.66 0.94191
Target:  5'- cGCGCgCCAAcGUgucgAGUGGGaGCGGGGCg -3'
miRNA:   3'- -CGCGaGGUU-CG----UCAUCCgCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 133125 0.67 0.896639
Target:  5'- uGUGUUCUGAGCAccAGGCGCAaAACc -3'
miRNA:   3'- -CGCGAGGUUCGUcaUCCGCGUcUUGa -5'
24481 5' -54.5 NC_005264.1 + 93121 0.66 0.937112
Target:  5'- cGCGCUCCc-GCGGUucacgauGGCGCcaauGAugUu -3'
miRNA:   3'- -CGCGAGGuuCGUCAu------CCGCGu---CUugA- -5'
24481 5' -54.5 NC_005264.1 + 61370 0.67 0.915457
Target:  5'- aUGCUUgGGGCGGUGauuauGGUGCuGAACUu -3'
miRNA:   3'- cGCGAGgUUCGUCAU-----CCGCGuCUUGA- -5'
24481 5' -54.5 NC_005264.1 + 114663 0.67 0.896639
Target:  5'- aGCGuCUCCAugaAGCGG-GGGUGCAGccACg -3'
miRNA:   3'- -CGC-GAGGU---UCGUCaUCCGCGUCu-UGa -5'
24481 5' -54.5 NC_005264.1 + 31391 0.68 0.860578
Target:  5'- cGCGcCUCCAAGCAcGUagcGGGcCGCcucGGGGCg -3'
miRNA:   3'- -CGC-GAGGUUCGU-CA---UCC-GCG---UCUUGa -5'
24481 5' -54.5 NC_005264.1 + 63271 0.66 0.926779
Target:  5'- uGCGCuugUCCAAG-AGUAGGcCGCAaGAAa- -3'
miRNA:   3'- -CGCG---AGGUUCgUCAUCC-GCGU-CUUga -5'
24481 5' -54.5 NC_005264.1 + 14861 0.67 0.921241
Target:  5'- -aGCUCaCGAGCGaUAGGUGCGGuAAUa -3'
miRNA:   3'- cgCGAG-GUUCGUcAUCCGCGUC-UUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.