miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24481 5' -54.5 NC_005264.1 + 40791 0.69 0.819213
Target:  5'- gGCGCUgCAAacuGCGGgGGGCGCuGGAUg -3'
miRNA:   3'- -CGCGAgGUU---CGUCaUCCGCGuCUUGa -5'
24481 5' -54.5 NC_005264.1 + 25644 0.68 0.880758
Target:  5'- cGCGCUCCGcguuuuccucaaucGGCAcGUcuggGGGCaGCAGAAg- -3'
miRNA:   3'- -CGCGAGGU--------------UCGU-CA----UCCG-CGUCUUga -5'
24481 5' -54.5 NC_005264.1 + 133125 0.67 0.896639
Target:  5'- uGUGUUCUGAGCAccAGGCGCAaAACc -3'
miRNA:   3'- -CGCGAGGUUCGUcaUCCGCGUcUUGa -5'
24481 5' -54.5 NC_005264.1 + 21508 0.74 0.539201
Target:  5'- uGgGCaccgCCGucGCAGUGGGCGCAGGugUa -3'
miRNA:   3'- -CgCGa---GGUu-CGUCAUCCGCGUCUugA- -5'
24481 5' -54.5 NC_005264.1 + 31513 0.68 0.852703
Target:  5'- gGCgGCUCCAGGCuc-GGGCGgGGAGg- -3'
miRNA:   3'- -CG-CGAGGUUCGucaUCCGCgUCUUga -5'
24481 5' -54.5 NC_005264.1 + 129588 0.67 0.896639
Target:  5'- cGCGCUCugCAGGCGcUGcGGCGCGGcGGCg -3'
miRNA:   3'- -CGCGAG--GUUCGUcAU-CCGCGUC-UUGa -5'
24481 5' -54.5 NC_005264.1 + 87628 0.73 0.600717
Target:  5'- cGCGCagggCCGAuGCAGccgcgugGGGCGCGGGACc -3'
miRNA:   3'- -CGCGa---GGUU-CGUCa------UCCGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 120127 0.67 0.903154
Target:  5'- gGCGCagCGAGCAGgAGGa-CGGAGCg -3'
miRNA:   3'- -CGCGagGUUCGUCaUCCgcGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 146924 0.7 0.782918
Target:  5'- gGCuaUCgGGGCAGUAguucguGGCGCAGAGgCUg -3'
miRNA:   3'- -CGcgAGgUUCGUCAU------CCGCGUCUU-GA- -5'
24481 5' -54.5 NC_005264.1 + 63819 0.67 0.915457
Target:  5'- uGCGCUagaUCGAGUAgGUAGuCGUAGAACg -3'
miRNA:   3'- -CGCGA---GGUUCGU-CAUCcGCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 91322 0.68 0.882899
Target:  5'- -aGCUCCAAGUcg-AGGCGCAccGCg -3'
miRNA:   3'- cgCGAGGUUCGucaUCCGCGUcuUGa -5'
24481 5' -54.5 NC_005264.1 + 114663 0.67 0.896639
Target:  5'- aGCGuCUCCAugaAGCGG-GGGUGCAGccACg -3'
miRNA:   3'- -CGC-GAGGU---UCGUCaUCCGCGUCu-UGa -5'
24481 5' -54.5 NC_005264.1 + 2614 0.78 0.372296
Target:  5'- gGCGCgagCCGAGCAGgcGGgGCGGAGuCUu -3'
miRNA:   3'- -CGCGa--GGUUCGUCauCCgCGUCUU-GA- -5'
24481 5' -54.5 NC_005264.1 + 74252 0.75 0.479968
Target:  5'- cGCGCUCCAgacacGGCGGUAGaG-GCGGGGCc -3'
miRNA:   3'- -CGCGAGGU-----UCGUCAUC-CgCGUCUUGa -5'
24481 5' -54.5 NC_005264.1 + 150540 0.68 0.852703
Target:  5'- gGCgGCUCCAGGCuc-GGGCGgGGAGg- -3'
miRNA:   3'- -CG-CGAGGUUCGucaUCCGCgUCUUga -5'
24481 5' -54.5 NC_005264.1 + 93577 0.66 0.946464
Target:  5'- cGCGCcCCAuggcAGCGGaugAGGCGCGcGAGu- -3'
miRNA:   3'- -CGCGaGGU----UCGUCa--UCCGCGU-CUUga -5'
24481 5' -54.5 NC_005264.1 + 50591 0.68 0.889886
Target:  5'- gGCGCU--GAGCAGcccGGCGCuGGACg -3'
miRNA:   3'- -CGCGAggUUCGUCau-CCGCGuCUUGa -5'
24481 5' -54.5 NC_005264.1 + 37377 0.67 0.896639
Target:  5'- aGC-CUCCGAGCA--GGGCGCGGc--- -3'
miRNA:   3'- -CGcGAGGUUCGUcaUCCGCGUCuuga -5'
24481 5' -54.5 NC_005264.1 + 110585 0.66 0.946464
Target:  5'- cCGUggCCGGGUgAGUAGGCgggggccccgaGCAGAACUu -3'
miRNA:   3'- cGCGa-GGUUCG-UCAUCCG-----------CGUCUUGA- -5'
24481 5' -54.5 NC_005264.1 + 111033 0.66 0.950776
Target:  5'- -gGUUCgAAGCGGUGGcucGCGCGGAc-- -3'
miRNA:   3'- cgCGAGgUUCGUCAUC---CGCGUCUuga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.