miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24482 3' -61.1 NC_005264.1 + 52526 0.66 0.698266
Target:  5'- -uUUCGUGcGCCGCGUGGcagaGUaCUGCAUc -3'
miRNA:   3'- auGAGCGC-CGGCGCGCC----CAaGACGUG- -5'
24482 3' -61.1 NC_005264.1 + 70153 0.66 0.687471
Target:  5'- aGCUCcaggagGCGGCCGCGUaGGUUCaggaacuccucuuUGCGg -3'
miRNA:   3'- aUGAG------CGCCGGCGCGcCCAAG-------------ACGUg -5'
24482 3' -61.1 NC_005264.1 + 117228 0.66 0.6786
Target:  5'- uUAC-CGCGGCCucugcGgGCGGGUgaUGCAg -3'
miRNA:   3'- -AUGaGCGCCGG-----CgCGCCCAagACGUg -5'
24482 3' -61.1 NC_005264.1 + 40956 0.66 0.6786
Target:  5'- --aUCGCaGCCGCaGCGGGcgacgGCGCg -3'
miRNA:   3'- augAGCGcCGGCG-CGCCCaaga-CGUG- -5'
24482 3' -61.1 NC_005264.1 + 56312 0.66 0.6786
Target:  5'- aACUcCGCGGCCGCGCuGccgccgUC-GCGCa -3'
miRNA:   3'- aUGA-GCGCCGGCGCGcCca----AGaCGUG- -5'
24482 3' -61.1 NC_005264.1 + 159983 0.66 0.6786
Target:  5'- --aUCGCaGCCGCaGCGGGcgacgGCGCg -3'
miRNA:   3'- augAGCGcCGGCG-CGCCCaaga-CGUG- -5'
24482 3' -61.1 NC_005264.1 + 46440 0.66 0.658789
Target:  5'- cGCUCGacguCGGCC-UGCGGcUUUUGCGCg -3'
miRNA:   3'- aUGAGC----GCCGGcGCGCCcAAGACGUG- -5'
24482 3' -61.1 NC_005264.1 + 47587 0.66 0.658789
Target:  5'- gGCUCGCGGggaCGCGUugGGGgagaCUcGCGCg -3'
miRNA:   3'- aUGAGCGCCg--GCGCG--CCCaa--GA-CGUG- -5'
24482 3' -61.1 NC_005264.1 + 131607 0.66 0.64885
Target:  5'- ----aGCGGCgCGCGUGGGcgC-GCGCg -3'
miRNA:   3'- augagCGCCG-GCGCGCCCaaGaCGUG- -5'
24482 3' -61.1 NC_005264.1 + 69054 0.66 0.64885
Target:  5'- gGC-CGCGGCCGC-CGGGcaggucaucgUCgucGCGCa -3'
miRNA:   3'- aUGaGCGCCGGCGcGCCCa---------AGa--CGUG- -5'
24482 3' -61.1 NC_005264.1 + 147777 0.67 0.638898
Target:  5'- aACuUCGUGGaCCGCGCGaa--CUGCGCg -3'
miRNA:   3'- aUG-AGCGCC-GGCGCGCccaaGACGUG- -5'
24482 3' -61.1 NC_005264.1 + 139060 0.67 0.628941
Target:  5'- aGCUCGCGGagGCGCcGGUUCcuUGCu- -3'
miRNA:   3'- aUGAGCGCCggCGCGcCCAAG--ACGug -5'
24482 3' -61.1 NC_005264.1 + 30234 0.67 0.617991
Target:  5'- ---cCGCGGCCaGCGCGgcaaagcGGUgccacgCUGCACc -3'
miRNA:   3'- augaGCGCCGG-CGCGC-------CCAa-----GACGUG- -5'
24482 3' -61.1 NC_005264.1 + 103801 0.67 0.609041
Target:  5'- aGCUacaaGCGGCgGgacCGCGGGgcUUGCGCu -3'
miRNA:   3'- aUGAg---CGCCGgC---GCGCCCaaGACGUG- -5'
24482 3' -61.1 NC_005264.1 + 19883 0.67 0.609041
Target:  5'- cGC-CGCGGCCGCGCuagccauuucGGGUgcUUUGUg- -3'
miRNA:   3'- aUGaGCGCCGGCGCG----------CCCA--AGACGug -5'
24482 3' -61.1 NC_005264.1 + 62225 0.67 0.609041
Target:  5'- cGCUcCGCGGCCGCuuCGGGgucgUCgGUAUc -3'
miRNA:   3'- aUGA-GCGCCGGCGc-GCCCa---AGaCGUG- -5'
24482 3' -61.1 NC_005264.1 + 132573 0.67 0.599112
Target:  5'- --gUCGCGGCCGCGCuacacuucGGUgcagCgugGCACc -3'
miRNA:   3'- augAGCGCCGGCGCGc-------CCAa---Ga--CGUG- -5'
24482 3' -61.1 NC_005264.1 + 92998 0.67 0.589206
Target:  5'- aGCaCGCGGCCGUaGCGGGggcagUCaagGCAg -3'
miRNA:   3'- aUGaGCGCCGGCG-CGCCCa----AGa--CGUg -5'
24482 3' -61.1 NC_005264.1 + 142963 0.67 0.589206
Target:  5'- gGCUagCGCGGCCGCGgCGGucUCUcggGCAUg -3'
miRNA:   3'- aUGA--GCGCCGGCGC-GCCcaAGA---CGUG- -5'
24482 3' -61.1 NC_005264.1 + 155929 0.67 0.589206
Target:  5'- --aUCGCGcccacggaaaGCCGCGCGcuGGgaCUGCGCg -3'
miRNA:   3'- augAGCGC----------CGGCGCGC--CCaaGACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.