miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24482 5' -52.3 NC_005264.1 + 7897 0.66 0.986502
Target:  5'- gUCGgagGuCUCcu-CGCCGGAgUACUGgGg -3'
miRNA:   3'- -AGUa--C-GAGuuuGCGGCCUgAUGACgC- -5'
24482 5' -52.3 NC_005264.1 + 126923 0.66 0.986502
Target:  5'- gUCGgagGuCUCcu-CGCCGGAgUACUGgGg -3'
miRNA:   3'- -AGUa--C-GAGuuuGCGGCCUgAUGACgC- -5'
24482 5' -52.3 NC_005264.1 + 79594 0.66 0.985998
Target:  5'- aUCGUGCUUcgccucggagaaguGGACGagggaaCUGGAgUGCUGCGc -3'
miRNA:   3'- -AGUACGAG--------------UUUGC------GGCCUgAUGACGC- -5'
24482 5' -52.3 NC_005264.1 + 91540 0.66 0.984768
Target:  5'- uUCAUGCUC--GCGCauauCGGGC-GCgGCGg -3'
miRNA:   3'- -AGUACGAGuuUGCG----GCCUGaUGaCGC- -5'
24482 5' -52.3 NC_005264.1 + 26411 0.66 0.98287
Target:  5'- cCAUGCUCuucCGCCucaGACUACgagaccGCGg -3'
miRNA:   3'- aGUACGAGuuuGCGGc--CUGAUGa-----CGC- -5'
24482 5' -52.3 NC_005264.1 + 111066 0.66 0.98287
Target:  5'- cCAaGUUC--GCGCCGGGCgAUUGCa -3'
miRNA:   3'- aGUaCGAGuuUGCGGCCUGaUGACGc -5'
24482 5' -52.3 NC_005264.1 + 52836 0.66 0.980798
Target:  5'- aUCAUGCaCAGugcuACGCgGGA--GCUGCGc -3'
miRNA:   3'- -AGUACGaGUU----UGCGgCCUgaUGACGC- -5'
24482 5' -52.3 NC_005264.1 + 125491 0.66 0.978546
Target:  5'- cUCGgcgGCgcggCGAACGUCGGGgUGC-GCGg -3'
miRNA:   3'- -AGUa--CGa---GUUUGCGGCCUgAUGaCGC- -5'
24482 5' -52.3 NC_005264.1 + 139057 0.66 0.978546
Target:  5'- uUCA-GCUCGcggaGGCGCCGGuuccUUGCUGUc -3'
miRNA:   3'- -AGUaCGAGU----UUGCGGCCu---GAUGACGc -5'
24482 5' -52.3 NC_005264.1 + 128648 0.66 0.978546
Target:  5'- ---cGCUCc-AUGCCGcGGCUGCUGUc -3'
miRNA:   3'- aguaCGAGuuUGCGGC-CUGAUGACGc -5'
24482 5' -52.3 NC_005264.1 + 6464 0.66 0.978546
Target:  5'- cUCGgcgGCgcggCGAACGUCGGGgUGC-GCGg -3'
miRNA:   3'- -AGUa--CGa---GUUUGCGGCCUgAUGaCGC- -5'
24482 5' -52.3 NC_005264.1 + 49192 0.66 0.97831
Target:  5'- aUCAUGCUCAAGCGCucacgccCGcGCUACcuggaaacGCGa -3'
miRNA:   3'- -AGUACGAGUUUGCG-------GCcUGAUGa-------CGC- -5'
24482 5' -52.3 NC_005264.1 + 98179 0.67 0.977103
Target:  5'- gCAUGUcUAGGCGcCCuccggaguucuuauuGGACUACUGCa -3'
miRNA:   3'- aGUACGaGUUUGC-GG---------------CCUGAUGACGc -5'
24482 5' -52.3 NC_005264.1 + 66273 0.67 0.967559
Target:  5'- aUCGcGCUCu-GCGUCGGACa--UGCGg -3'
miRNA:   3'- -AGUaCGAGuuUGCGGCCUGaugACGC- -5'
24482 5' -52.3 NC_005264.1 + 36215 0.67 0.964283
Target:  5'- -gGUGCUCGAcgcguuuucuGgGCUGGACgaUGCUGCc -3'
miRNA:   3'- agUACGAGUU----------UgCGGCCUG--AUGACGc -5'
24482 5' -52.3 NC_005264.1 + 45773 0.67 0.964283
Target:  5'- aCA-GCgauGGGCGCCGGagcgGCUAUUGCGg -3'
miRNA:   3'- aGUaCGag-UUUGCGGCC----UGAUGACGC- -5'
24482 5' -52.3 NC_005264.1 + 133182 0.68 0.953082
Target:  5'- -gAUGCUaCGcAACGCggCGGACcgACUGCGg -3'
miRNA:   3'- agUACGA-GU-UUGCG--GCCUGa-UGACGC- -5'
24482 5' -52.3 NC_005264.1 + 4590 0.68 0.948875
Target:  5'- -gGUGCUCAAGCGagcucgcaaCGGAaUGCUGUa -3'
miRNA:   3'- agUACGAGUUUGCg--------GCCUgAUGACGc -5'
24482 5' -52.3 NC_005264.1 + 17645 0.68 0.944425
Target:  5'- gUUAUGCUCAggUGUCGGcCUA--GCGg -3'
miRNA:   3'- -AGUACGAGUuuGCGGCCuGAUgaCGC- -5'
24482 5' -52.3 NC_005264.1 + 147837 0.68 0.944425
Target:  5'- uUCAUG-UUAGGCGCCGGcACgguaUGCGg -3'
miRNA:   3'- -AGUACgAGUUUGCGGCC-UGaug-ACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.