Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24482 | 5' | -52.3 | NC_005264.1 | + | 4590 | 0.68 | 0.948875 |
Target: 5'- -gGUGCUCAAGCGagcucgcaaCGGAaUGCUGUa -3' miRNA: 3'- agUACGAGUUUGCg--------GCCUgAUGACGc -5' |
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24482 | 5' | -52.3 | NC_005264.1 | + | 6464 | 0.66 | 0.978546 |
Target: 5'- cUCGgcgGCgcggCGAACGUCGGGgUGC-GCGg -3' miRNA: 3'- -AGUa--CGa---GUUUGCGGCCUgAUGaCGC- -5' |
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24482 | 5' | -52.3 | NC_005264.1 | + | 7897 | 0.66 | 0.986502 |
Target: 5'- gUCGgagGuCUCcu-CGCCGGAgUACUGgGg -3' miRNA: 3'- -AGUa--C-GAGuuuGCGGCCUgAUGACgC- -5' |
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24482 | 5' | -52.3 | NC_005264.1 | + | 8369 | 0.73 | 0.767628 |
Target: 5'- -gAUGCUUAccGGCGCCGGACgcgGC-GCGu -3' miRNA: 3'- agUACGAGU--UUGCGGCCUGa--UGaCGC- -5' |
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24482 | 5' | -52.3 | NC_005264.1 | + | 17645 | 0.68 | 0.944425 |
Target: 5'- gUUAUGCUCAggUGUCGGcCUA--GCGg -3' miRNA: 3'- -AGUACGAGUuuGCGGCCuGAUgaCGC- -5' |
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24482 | 5' | -52.3 | NC_005264.1 | + | 26411 | 0.66 | 0.98287 |
Target: 5'- cCAUGCUCuucCGCCucaGACUACgagaccGCGg -3' miRNA: 3'- aGUACGAGuuuGCGGc--CUGAUGa-----CGC- -5' |
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24482 | 5' | -52.3 | NC_005264.1 | + | 36215 | 0.67 | 0.964283 |
Target: 5'- -gGUGCUCGAcgcguuuucuGgGCUGGACgaUGCUGCc -3' miRNA: 3'- agUACGAGUU----------UgCGGCCUG--AUGACGc -5' |
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24482 | 5' | -52.3 | NC_005264.1 | + | 41420 | 0.7 | 0.893203 |
Target: 5'- ---gGCaggCcGGCGCCGGGCUcCUGCGg -3' miRNA: 3'- aguaCGa--GuUUGCGGCCUGAuGACGC- -5' |
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24482 | 5' | -52.3 | NC_005264.1 | + | 45773 | 0.67 | 0.964283 |
Target: 5'- aCA-GCgauGGGCGCCGGagcgGCUAUUGCGg -3' miRNA: 3'- aGUaCGag-UUUGCGGCC----UGAUGACGC- -5' |
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24482 | 5' | -52.3 | NC_005264.1 | + | 48124 | 1.1 | 0.00565 |
Target: 5'- cUCAUGCUCAAACGCCGGACUACUGCGa -3' miRNA: 3'- -AGUACGAGUUUGCGGCCUGAUGACGC- -5' |
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24482 | 5' | -52.3 | NC_005264.1 | + | 49192 | 0.66 | 0.97831 |
Target: 5'- aUCAUGCUCAAGCGCucacgccCGcGCUACcuggaaacGCGa -3' miRNA: 3'- -AGUACGAGUUUGCG-------GCcUGAUGa-------CGC- -5' |
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24482 | 5' | -52.3 | NC_005264.1 | + | 52836 | 0.66 | 0.980798 |
Target: 5'- aUCAUGCaCAGugcuACGCgGGA--GCUGCGc -3' miRNA: 3'- -AGUACGaGUU----UGCGgCCUgaUGACGC- -5' |
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24482 | 5' | -52.3 | NC_005264.1 | + | 59720 | 0.69 | 0.93973 |
Target: 5'- cCGgcgGCUaccGCGCCGGACguauugGCUGCc -3' miRNA: 3'- aGUa--CGAguuUGCGGCCUGa-----UGACGc -5' |
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24482 | 5' | -52.3 | NC_005264.1 | + | 63391 | 0.71 | 0.871743 |
Target: 5'- uUCAUGUggUCAAGCGCCGGAgaUGCcaaaGCa -3' miRNA: 3'- -AGUACG--AGUUUGCGGCCUg-AUGa---CGc -5' |
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24482 | 5' | -52.3 | NC_005264.1 | + | 64625 | 0.73 | 0.786671 |
Target: 5'- -gGUGCUgucCAgcAGCGCCGGAUU-CUGCGa -3' miRNA: 3'- agUACGA---GU--UUGCGGCCUGAuGACGC- -5' |
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24482 | 5' | -52.3 | NC_005264.1 | + | 66273 | 0.67 | 0.967559 |
Target: 5'- aUCGcGCUCu-GCGUCGGACa--UGCGg -3' miRNA: 3'- -AGUaCGAGuuUGCGGCCUGaugACGC- -5' |
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24482 | 5' | -52.3 | NC_005264.1 | + | 66592 | 0.7 | 0.886283 |
Target: 5'- aCAgGCUCu--CGCUGGGCUGCgccGCGu -3' miRNA: 3'- aGUaCGAGuuuGCGGCCUGAUGa--CGC- -5' |
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24482 | 5' | -52.3 | NC_005264.1 | + | 79594 | 0.66 | 0.985998 |
Target: 5'- aUCGUGCUUcgccucggagaaguGGACGagggaaCUGGAgUGCUGCGc -3' miRNA: 3'- -AGUACGAG--------------UUUGC------GGCCUgAUGACGC- -5' |
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24482 | 5' | -52.3 | NC_005264.1 | + | 84958 | 0.75 | 0.676823 |
Target: 5'- -gGUGCUCGcuuGCgGCCaGGCUGCUGCGu -3' miRNA: 3'- agUACGAGUu--UG-CGGcCUGAUGACGC- -5' |
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24482 | 5' | -52.3 | NC_005264.1 | + | 91540 | 0.66 | 0.984768 |
Target: 5'- uUCAUGCUC--GCGCauauCGGGC-GCgGCGg -3' miRNA: 3'- -AGUACGAGuuUGCG----GCCUGaUGaCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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