miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24483 3' -54.4 NC_005264.1 + 132931 0.66 0.944531
Target:  5'- aCGCAUGAGGCugGCAGuAGGGcguuucgccgccauGCCaUGCGa -3'
miRNA:   3'- cGCGUAUUCCG--CGUC-UUCU--------------CGG-ACGU- -5'
24483 3' -54.4 NC_005264.1 + 131458 0.66 0.941279
Target:  5'- cGUGCuugGAGGCGCGGugcggucuaAAG-GCCcgGCAg -3'
miRNA:   3'- -CGCGua-UUCCGCGUC---------UUCuCGGa-CGU- -5'
24483 3' -54.4 NC_005264.1 + 12431 0.66 0.941279
Target:  5'- cGUGCuugGAGGCGCGGugcggucuaAAG-GCCcgGCAg -3'
miRNA:   3'- -CGCGua-UUCCGCGUC---------UUCuCGGa-CGU- -5'
24483 3' -54.4 NC_005264.1 + 122608 0.66 0.938395
Target:  5'- cGCGUAacgccagGAGGCGCGaagaauuaccgccgcGggGGGCC-GCGa -3'
miRNA:   3'- -CGCGUa------UUCCGCGU---------------CuuCUCGGaCGU- -5'
24483 3' -54.4 NC_005264.1 + 3581 0.66 0.938395
Target:  5'- cGCGUAacgccagGAGGCGCGaagaauuaccgccgcGggGGGCC-GCGa -3'
miRNA:   3'- -CGCGUa------UUCCGCGU---------------CuuCUCGGaCGU- -5'
24483 3' -54.4 NC_005264.1 + 51358 0.66 0.936423
Target:  5'- cCGaCAggaAGGGCGCAgcgucuguGAAGGGCUUGCc -3'
miRNA:   3'- cGC-GUa--UUCCGCGU--------CUUCUCGGACGu -5'
24483 3' -54.4 NC_005264.1 + 53113 0.66 0.936423
Target:  5'- gGCGCucggcgAGGGgGCcGAGGAGgCCggGCAa -3'
miRNA:   3'- -CGCGua----UUCCgCGuCUUCUC-GGa-CGU- -5'
24483 3' -54.4 NC_005264.1 + 43372 0.66 0.935924
Target:  5'- cGCGCAUAgguacgagacgcuAGG-GCAGAGGGGC--GCGa -3'
miRNA:   3'- -CGCGUAU-------------UCCgCGUCUUCUCGgaCGU- -5'
24483 3' -54.4 NC_005264.1 + 162399 0.66 0.935924
Target:  5'- cGCGCAUAgguacgagacgcuAGG-GCAGAGGGGC--GCGa -3'
miRNA:   3'- -CGCGUAU-------------UCCgCGUCUUCUCGgaCGU- -5'
24483 3' -54.4 NC_005264.1 + 83124 0.66 0.931319
Target:  5'- gGCGCc-AAGGcCGCGGAGGcgcGUCUGCc -3'
miRNA:   3'- -CGCGuaUUCC-GCGUCUUCu--CGGACGu -5'
24483 3' -54.4 NC_005264.1 + 8292 0.66 0.931319
Target:  5'- gGCGCccguGGGCGaCGGggGcaCCUGCGc -3'
miRNA:   3'- -CGCGuau-UCCGC-GUCuuCucGGACGU- -5'
24483 3' -54.4 NC_005264.1 + 127319 0.66 0.931319
Target:  5'- gGCGCccguGGGCGaCGGggGcaCCUGCGc -3'
miRNA:   3'- -CGCGuau-UCCGC-GUCuuCucGGACGU- -5'
24483 3' -54.4 NC_005264.1 + 129517 0.66 0.931319
Target:  5'- gGCGCcgGAGGCGaCGGAAcca-CUGCGg -3'
miRNA:   3'- -CGCGuaUUCCGC-GUCUUcucgGACGU- -5'
24483 3' -54.4 NC_005264.1 + 51655 0.66 0.931319
Target:  5'- gGUGCAUGaAGGC-CAauucGAGAGCCgGCAg -3'
miRNA:   3'- -CGCGUAU-UCCGcGUc---UUCUCGGaCGU- -5'
24483 3' -54.4 NC_005264.1 + 22466 0.66 0.931319
Target:  5'- cGCGCAUAuuGGGCGCuucgcucGGCCUaucGCAu -3'
miRNA:   3'- -CGCGUAU--UCCGCGucuuc--UCGGA---CGU- -5'
24483 3' -54.4 NC_005264.1 + 131612 0.66 0.930268
Target:  5'- cGCGCGUGGGcgcGCGCGGAgaagaacAGAuggucacgccucgGUCUGCGg -3'
miRNA:   3'- -CGCGUAUUC---CGCGUCU-------UCU-------------CGGACGU- -5'
24483 3' -54.4 NC_005264.1 + 150605 0.66 0.925965
Target:  5'- gGCGCcaGAGGUG-GGgcGAGUCUGCu -3'
miRNA:   3'- -CGCGuaUUCCGCgUCuuCUCGGACGu -5'
24483 3' -54.4 NC_005264.1 + 50582 0.66 0.925965
Target:  5'- aGCGCAcgcGGCGCuGAGcAGCCcgGCGc -3'
miRNA:   3'- -CGCGUauuCCGCGuCUUcUCGGa-CGU- -5'
24483 3' -54.4 NC_005264.1 + 31578 0.66 0.925965
Target:  5'- gGCGCcaGAGGUG-GGgcGAGUCUGCu -3'
miRNA:   3'- -CGCGuaUUCCGCgUCuuCUCGGACGu -5'
24483 3' -54.4 NC_005264.1 + 76103 0.66 0.925416
Target:  5'- gGCGCGaacaGCGCGGcaucagaGGGGGUCUGCAg -3'
miRNA:   3'- -CGCGUauucCGCGUC-------UUCUCGGACGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.