Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24483 | 3' | -54.4 | NC_005264.1 | + | 132931 | 0.66 | 0.944531 |
Target: 5'- aCGCAUGAGGCugGCAGuAGGGcguuucgccgccauGCCaUGCGa -3' miRNA: 3'- cGCGUAUUCCG--CGUC-UUCU--------------CGG-ACGU- -5' |
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24483 | 3' | -54.4 | NC_005264.1 | + | 131458 | 0.66 | 0.941279 |
Target: 5'- cGUGCuugGAGGCGCGGugcggucuaAAG-GCCcgGCAg -3' miRNA: 3'- -CGCGua-UUCCGCGUC---------UUCuCGGa-CGU- -5' |
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24483 | 3' | -54.4 | NC_005264.1 | + | 12431 | 0.66 | 0.941279 |
Target: 5'- cGUGCuugGAGGCGCGGugcggucuaAAG-GCCcgGCAg -3' miRNA: 3'- -CGCGua-UUCCGCGUC---------UUCuCGGa-CGU- -5' |
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24483 | 3' | -54.4 | NC_005264.1 | + | 122608 | 0.66 | 0.938395 |
Target: 5'- cGCGUAacgccagGAGGCGCGaagaauuaccgccgcGggGGGCC-GCGa -3' miRNA: 3'- -CGCGUa------UUCCGCGU---------------CuuCUCGGaCGU- -5' |
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24483 | 3' | -54.4 | NC_005264.1 | + | 3581 | 0.66 | 0.938395 |
Target: 5'- cGCGUAacgccagGAGGCGCGaagaauuaccgccgcGggGGGCC-GCGa -3' miRNA: 3'- -CGCGUa------UUCCGCGU---------------CuuCUCGGaCGU- -5' |
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24483 | 3' | -54.4 | NC_005264.1 | + | 51358 | 0.66 | 0.936423 |
Target: 5'- cCGaCAggaAGGGCGCAgcgucuguGAAGGGCUUGCc -3' miRNA: 3'- cGC-GUa--UUCCGCGU--------CUUCUCGGACGu -5' |
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24483 | 3' | -54.4 | NC_005264.1 | + | 53113 | 0.66 | 0.936423 |
Target: 5'- gGCGCucggcgAGGGgGCcGAGGAGgCCggGCAa -3' miRNA: 3'- -CGCGua----UUCCgCGuCUUCUC-GGa-CGU- -5' |
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24483 | 3' | -54.4 | NC_005264.1 | + | 43372 | 0.66 | 0.935924 |
Target: 5'- cGCGCAUAgguacgagacgcuAGG-GCAGAGGGGC--GCGa -3' miRNA: 3'- -CGCGUAU-------------UCCgCGUCUUCUCGgaCGU- -5' |
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24483 | 3' | -54.4 | NC_005264.1 | + | 162399 | 0.66 | 0.935924 |
Target: 5'- cGCGCAUAgguacgagacgcuAGG-GCAGAGGGGC--GCGa -3' miRNA: 3'- -CGCGUAU-------------UCCgCGUCUUCUCGgaCGU- -5' |
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24483 | 3' | -54.4 | NC_005264.1 | + | 83124 | 0.66 | 0.931319 |
Target: 5'- gGCGCc-AAGGcCGCGGAGGcgcGUCUGCc -3' miRNA: 3'- -CGCGuaUUCC-GCGUCUUCu--CGGACGu -5' |
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24483 | 3' | -54.4 | NC_005264.1 | + | 8292 | 0.66 | 0.931319 |
Target: 5'- gGCGCccguGGGCGaCGGggGcaCCUGCGc -3' miRNA: 3'- -CGCGuau-UCCGC-GUCuuCucGGACGU- -5' |
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24483 | 3' | -54.4 | NC_005264.1 | + | 127319 | 0.66 | 0.931319 |
Target: 5'- gGCGCccguGGGCGaCGGggGcaCCUGCGc -3' miRNA: 3'- -CGCGuau-UCCGC-GUCuuCucGGACGU- -5' |
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24483 | 3' | -54.4 | NC_005264.1 | + | 129517 | 0.66 | 0.931319 |
Target: 5'- gGCGCcgGAGGCGaCGGAAcca-CUGCGg -3' miRNA: 3'- -CGCGuaUUCCGC-GUCUUcucgGACGU- -5' |
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24483 | 3' | -54.4 | NC_005264.1 | + | 51655 | 0.66 | 0.931319 |
Target: 5'- gGUGCAUGaAGGC-CAauucGAGAGCCgGCAg -3' miRNA: 3'- -CGCGUAU-UCCGcGUc---UUCUCGGaCGU- -5' |
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24483 | 3' | -54.4 | NC_005264.1 | + | 22466 | 0.66 | 0.931319 |
Target: 5'- cGCGCAUAuuGGGCGCuucgcucGGCCUaucGCAu -3' miRNA: 3'- -CGCGUAU--UCCGCGucuuc--UCGGA---CGU- -5' |
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24483 | 3' | -54.4 | NC_005264.1 | + | 131612 | 0.66 | 0.930268 |
Target: 5'- cGCGCGUGGGcgcGCGCGGAgaagaacAGAuggucacgccucgGUCUGCGg -3' miRNA: 3'- -CGCGUAUUC---CGCGUCU-------UCU-------------CGGACGU- -5' |
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24483 | 3' | -54.4 | NC_005264.1 | + | 150605 | 0.66 | 0.925965 |
Target: 5'- gGCGCcaGAGGUG-GGgcGAGUCUGCu -3' miRNA: 3'- -CGCGuaUUCCGCgUCuuCUCGGACGu -5' |
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24483 | 3' | -54.4 | NC_005264.1 | + | 50582 | 0.66 | 0.925965 |
Target: 5'- aGCGCAcgcGGCGCuGAGcAGCCcgGCGc -3' miRNA: 3'- -CGCGUauuCCGCGuCUUcUCGGa-CGU- -5' |
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24483 | 3' | -54.4 | NC_005264.1 | + | 31578 | 0.66 | 0.925965 |
Target: 5'- gGCGCcaGAGGUG-GGgcGAGUCUGCu -3' miRNA: 3'- -CGCGuaUUCCGCgUCuuCUCGGACGu -5' |
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24483 | 3' | -54.4 | NC_005264.1 | + | 76103 | 0.66 | 0.925416 |
Target: 5'- gGCGCGaacaGCGCGGcaucagaGGGGGUCUGCAg -3' miRNA: 3'- -CGCGUauucCGCGUC-------UUCUCGGACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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