miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24483 5' -59.3 NC_005264.1 + 21982 0.66 0.733535
Target:  5'- --gGUAGGgcCGCCGGCuguCGuCGCCUCu- -3'
miRNA:   3'- aaaCGUUC--GCGGCCGu--GC-GCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 95456 0.66 0.733535
Target:  5'- --cGCuaccGCGCCGGCGgGCGCagCGAg -3'
miRNA:   3'- aaaCGuu--CGCGGCCGUgCGCGgaGUU- -5'
24483 5' -59.3 NC_005264.1 + 104816 0.66 0.733535
Target:  5'- --aGCGGGCGCC-GCACGacgGCCUg-- -3'
miRNA:   3'- aaaCGUUCGCGGcCGUGCg--CGGAguu -5'
24483 5' -59.3 NC_005264.1 + 121862 0.66 0.733535
Target:  5'- --aGCGAGgGUCGGCGCaaGCUUCc- -3'
miRNA:   3'- aaaCGUUCgCGGCCGUGcgCGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 149387 0.66 0.72364
Target:  5'- --cGCAggagccccuucGGCGCCGccGCGuCGCGUCUCGg -3'
miRNA:   3'- aaaCGU-----------UCGCGGC--CGU-GCGCGGAGUu -5'
24483 5' -59.3 NC_005264.1 + 30360 0.66 0.72364
Target:  5'- --cGCAggagccccuucGGCGCCGccGCGuCGCGUCUCGg -3'
miRNA:   3'- aaaCGU-----------UCGCGGC--CGU-GCGCGGAGUu -5'
24483 5' -59.3 NC_005264.1 + 8324 0.66 0.713665
Target:  5'- cUUGUuuGCGCgCGGCAUguGCGCCccgCAGa -3'
miRNA:   3'- aAACGuuCGCG-GCCGUG--CGCGGa--GUU- -5'
24483 5' -59.3 NC_005264.1 + 146770 0.66 0.713665
Target:  5'- --aGCAAGCGCCGcGCG-GCGguUCUCGGu -3'
miRNA:   3'- aaaCGUUCGCGGC-CGUgCGC--GGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 74238 0.66 0.713665
Target:  5'- --cGUAGcGCGCUGGC-CGCGCUcCAGa -3'
miRNA:   3'- aaaCGUU-CGCGGCCGuGCGCGGaGUU- -5'
24483 5' -59.3 NC_005264.1 + 66545 0.66 0.710658
Target:  5'- gUUGCGGGCGUCGGCGauuuccacaagcucCGcCGCCa--- -3'
miRNA:   3'- aAACGUUCGCGGCCGU--------------GC-GCGGaguu -5'
24483 5' -59.3 NC_005264.1 + 103012 0.66 0.70362
Target:  5'- aUUGC--GCGCUGGCguACGCGacCCUCAc -3'
miRNA:   3'- aAACGuuCGCGGCCG--UGCGC--GGAGUu -5'
24483 5' -59.3 NC_005264.1 + 42111 0.66 0.693514
Target:  5'- --cGCAGuCGCCGGCAC-CGuCCUCc- -3'
miRNA:   3'- aaaCGUUcGCGGCCGUGcGC-GGAGuu -5'
24483 5' -59.3 NC_005264.1 + 59711 0.66 0.693514
Target:  5'- --cGCGccGCGCCGGCGgcuacCGCGCCg--- -3'
miRNA:   3'- aaaCGUu-CGCGGCCGU-----GCGCGGaguu -5'
24483 5' -59.3 NC_005264.1 + 129594 0.67 0.673156
Target:  5'- -cUGCAGGCGCugCGGCGCgGCGgcgaagcuUCUCGAg -3'
miRNA:   3'- aaACGUUCGCG--GCCGUG-CGC--------GGAGUU- -5'
24483 5' -59.3 NC_005264.1 + 47711 0.67 0.673156
Target:  5'- --gGCGAGC-UCGGCAgGCGCCagcUCAc -3'
miRNA:   3'- aaaCGUUCGcGGCCGUgCGCGG---AGUu -5'
24483 5' -59.3 NC_005264.1 + 18415 0.67 0.673156
Target:  5'- --gGCcGGCGCaGGCGCGC-CCUCu- -3'
miRNA:   3'- aaaCGuUCGCGgCCGUGCGcGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 59108 0.67 0.673156
Target:  5'- --cGUuGGCGCUGGUuaACGUGCUUCGu -3'
miRNA:   3'- aaaCGuUCGCGGCCG--UGCGCGGAGUu -5'
24483 5' -59.3 NC_005264.1 + 127809 0.67 0.662921
Target:  5'- --gGCGGGCGUCGGCcaggacggccaGCGCuCCUCu- -3'
miRNA:   3'- aaaCGUUCGCGGCCG-----------UGCGcGGAGuu -5'
24483 5' -59.3 NC_005264.1 + 20252 0.67 0.662921
Target:  5'- --gGCAGGgGUugCGGCGCG-GCCUCGc -3'
miRNA:   3'- aaaCGUUCgCG--GCCGUGCgCGGAGUu -5'
24483 5' -59.3 NC_005264.1 + 8783 0.67 0.662921
Target:  5'- --gGCGGGCGUCGGCcaggacggccaGCGCuCCUCu- -3'
miRNA:   3'- aaaCGUUCGCGGCCG-----------UGCGcGGAGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.